Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02220 CGCCTAGCGTGCAATTGCATCTGGAAGTTCCGTCTTAGATTCACGAACTCCATAGCCAAAGTCGGAATTGCGACCATCTCGAGTCCCTTGTCGTCGGGATATTTCTCTCCGAATTGTCTCGCTTTGAACGGAACTGTACGTCACTCTAATTCTGGTCCGCCATGGCTCCGCCTGCGCCGTCTCATCGAACTTCATCGCCGTCCCAACCATCAGGAAACTAAAATCGAATTTGTATTTGCTGCTATTCATCGCATGGAGCCTTACTGGAATTTGATTGACTTGACCAGAAAAAGCGAAGTATCTGATCTGAAATCACAGCTCCGGCAGCTTGCTGGAAGCAGAGCACCGGGCGTTGAAGATTCCAAGAGGGAACTTTTTAAGAAAGTGATCTCATACATGACTATTGGGATTGATGTATCGTCTCTCTTTGGAGAGATGGTGATGTGCTCTGCTACATCAGACATCGTTCTCAAGAAAATGTGTTATCTATACGTTGGCAATTATGCCAAGGTTAATCCTGATCTTGCTTTGCTCACAATTAATTTCCTTCAAAGAGATTGCAAGGACGATGATCCAATGATTAGAGGGCTTGCTTTGAGGAGTTTATGTTCACTTCGGGTTGCAAATCTGGTTGAGTATCTGGTAGGGCCCTTGGGTTCTGGTTTGAAGGATAGCAATAGTTATGTGAGAATGGTTGCTGTTACGGGGGTTTTGAAACTATATCGTATATCTGCTTCAACATGCACCGATGCTGATTTTCTGGCCACGCTGAAGCATTTGATGCTTAATGATCGAGATACTCAGGTAGTTGCAAATTGTTTATCTGCTCTACAAGAGATTTTGACCTCAGAAGCCAGCTCCTTGGAAGAAGCATCTAGAGAAAGAGAGGCTTTGCTCAGTAAGCCAGTTGTGTATTATCTTCTGAATCGGATCAAAGAATTTAATGAATGGGCACAGTGTCTCATACTTGAATTGGTTTCCAAATATGTACCGTCAGATAGCAATGAGATTTTTGACATCATGAATCTCCTTGAAGATAGACTTCAGCATGCTAATGGTGCTGTGGTATTGGCAACCACCAAAGTTTTTCTACATTTGACTTTATCTATGACTGATGTTCATCAGCAGTATATGGAGTCCAGGATAACCTCTACCTCCAATCTGGCAGTCCAAGTCTATGAACGGATTAAAGCCCCTCTCTTAACCTTAGTGAGCTCAGGAAGCCCAGAGCAATCTTATGCAGTTCTCAGCCACCTGCATCTCCTGGTGATGCGTGCTCCATTTGTATTTTCTGCAGACTATAAATACTTCTATTGTCAGTACAATGAGCCATCTTATGTCAAAAAATTGAAGCTCGAAATGTTGACTGCAGTGGCAAATGAGAGCAACACTTACGAAATTGTGACAGAATTATGCGAATATGTTGCGAATGTTGATATTCCCATTGCAAGAGAGTCAATACGTGCTGTTGGAAAAATAGCACTGCAACAGTATGATGTTAATGCAATTGTTGATCGACTTCTGCAGTTTTTGGAGATGGAAAAGGACTATGTGACTGCTGAAGCTCTGGTGCTTGTTAAAGATCTTTTGAGAAAATATCCACAATGGAGTCATGATTGCATTGCTGTTGTCGGCAGCATCAGCAGTAAAAATATTCAAGAACCAAAGGCCAAAGCAGCTCTTATCTGGATGTTGGGGGAGTACTCACAGGACATGCAAGATGCCCCATACATTCTAGAGAGTTTAGTTGAGAGCTGGGATGATGAGCCTTCTGCTGAGGTACGCCTACATCTTCTCACTGCAGTTATGAAGTGTTTCTTCAAAAGGCCTCCCGAAACTCAAAAGGCCTTGGGAGCTGCACTGGCAGTAGGTCTTGCTGATTTTCACCAGGTAGAGGATGTGCATGATCGAGCACTATTCTACTACAGGCTTTTGCAGTACAACGTTTCTGTAGCTGAACGTGTGGTCAATCCTCCAAAGCAAGCCGTTTCTGTATTTGCTGATACACAGAGCAGCGAAGTCAAGGATAGAATATTTGATGAATTTAATAGTTTGTCTGTTATTTACCAGAAGGTAACGGCAATTAATCCTCATGAGTATCCAATATATTTACCTTTTGACTCCCTCGTTGTAAGCACCCAGTTAGCTTCAGCTAAGTATATGCTGTTTAGCTCTGACCAAAATTTGACTTTTCCATTATATAATCATATAATTTGTCCATCTTACATGTTCACTGACAAGGAACACCGCGGTCCATTTGAGTTCTCGGACGAACTTGGAAATTTATCTATTGGTGCAGAGTCTGCAGATACTACTGTTGTTCCAGCTCAGCAAGTTGAGGCAAATGATAAGGATCTACTTCTAAGCACCTCAGCGGAAGAGGAAACTAGAGTCGTTAGTAACAATGGTTCTGCATATAGTGCTCCTTCATATGAAGGCTCCATTGGATCTCTCATTCCTCAAGCGCCATTAGAATTTGCAGTATCAAATCCTTCCGTACCAGGCCCTGTTCCACAGTCGAGCTCTCCATTTGATGATCTATTTGGTTTAGGTCTACCAACAGTTTCTGCTCCAGCTCCCACTCCGGCTCCCGCCGCACCTTCACCTCCTCCTTTGCAGCTAAATTCAAAAGCTGTTTTAGATCCAGGAACTTTTCAGCAGAAATGGCGCCAGCTGCCTATATCTATATCACAGGAATTTGCTGTAAGCCCTCAAGGAGTTGCAGCGCTAACATCACCACAAGTCCTCCTCCGGCACATGCAAAAGCATTCCATTCATTCCATTGCATCCGGTGGCCAGGCACCTAACTTCAAAATTTTCTTCTTCGCACAAAAACAAGAAGAACCATCCAACTTTCTGGTGGAGTGCATAATCAACACAGCATCTGCCAAAGCACAGGTAAAGTTCAAAGCCGACGACCAAAGCGCATCACAAGCTTTCTCATCTTTGTTCCAATCAGCTCTGGCCAACTTTGGTATGCCATGA 2985 43.38 RLACNCIWKFRLRFTNSIAKVGIATISSPLSSGYFSPNCLALNGTVRHSNSGPPWLRLRRLIELHRRPNHQETKIEFVFAAIHRMEPYWNLIDLTRKSEVSDLKSQLRQLAGSRAPGVEDSKRELFKKVISYMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDDDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDSNSYVRMVAVTGVLKLYRISASTCTDADFLATLKHLMLNDRDTQVVANCLSALQEILTSEASSLEEASREREALLSKPVVYYLLNRIKEFNEWAQCLILELVSKYVPSDSNEIFDIMNLLEDRLQHANGAVVLATTKVFLHLTLSMTDVHQQYMESRITSTSNLAVQVYERIKAPLLTLVSSGSPEQSYAVLSHLHLLVMRAPFVFSADYKYFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYVANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSKNIQEPKAKAALIWMLGEYSQDMQDAPYILESLVESWDDEPSAEVRLHLLTAVMKCFFKRPPETQKALGAALAVGLADFHQVEDVHDRALFYYRLLQYNVSVAERVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVIYQKVTAINPHEYPIYLPFDSLVVSTQLASAKYMLFSSDQNLTFPLYNHIICPSYMFTDKEHRGPFEFSDELGNLSIGAESADTTVVPAQQVEANDKDLLLSTSAEEETRVVSNNGSAYSAPSYEGSIGSLIPQAPLEFAVSNPSVPGPVPQSSSPFDDLFGLGLPTVSAPAPTPAPAAPSPPPLQLNSKAVLDPGTFQQKWRQLPISISQEFAVSPQGVAALTSPQVLLRHMQKHSIHSIASGGQAPNFKIFFFAQKQEEPSNFLVECIINTASAKAQVKFKADDQSASQAFSSLFQSALANFGMP 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29252759 29259464 + Lsi04G022200.1 Lsi04g02220 662269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02220 994 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 98 693 - -
Lsi04g02220 994 Gene3D - 90 696 IPR011989 -
Lsi04g02220 994 PIRSF Beta_adaptin 766 994 IPR016342 GO:0015031|GO:0030276
Lsi04g02220 994 PIRSF Beta_adaptin 92 703 IPR016342 GO:0015031|GO:0030276
Lsi04g02220 994 Pfam Beta2-adaptin appendage, C-terminal sub-domain 876 988 IPR015151 GO:0006886|GO:0016192|GO:0030131
Lsi04g02220 994 Gene3D - 863 992 IPR012295 -
Lsi04g02220 994 SUPERFAMILY ARM repeat 106 691 IPR016024 -
Lsi04g02220 994 PANTHER AP-4 COMPLEX SUBUNIT BETA-1 718 992 - -
Lsi04g02220 994 SMART B2_adapt_app_C_2 872 989 IPR015151 GO:0006886|GO:0016192|GO:0030131
Lsi04g02220 994 Pfam Adaptin N terminal region 117 646 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lsi04g02220 994 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 718 992 IPR026739 GO:0016192
Lsi04g02220 994 PANTHER ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER 98 693 IPR026739 GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02220 - - - csv:101215264 1467.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00888 Lsi-Chr4:8829334 Lsi04g02220 Lsi-Chr4:29252759 3.25E-33 dispersed
Lsi04g02220 Lsi-Chr4:29252759 Lsi11g01425 Lsi-Chr11:22813440 2.03E-101 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g336 Blo01g01708 . . . . Bpe02g00235 . Bma01g02485 . . Cma01g01595 . . . . . . . . . . . . . . . . . . . . Cone4ag1537 Cone7ag1415 . . Lsi04g02220 Csa03g04432 Chy04g00267 . . . . . . . . . Sed05g1613 Cmo01g01643 . . . Car01g01214 . . Cpe02g00382 Bhi09g02413 Tan01g3774 Cmetu04g2386 . Hepe01g2114 Mch11g0652 . . . . . . . . . . . Cme04g00299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010989 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02220 Lsi_Chr04 FPKM 56.872417 57.696083 39.945053 40.988548 38.724735 39.078415 40.325165 7.044026 6.877802 7.614388