Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02221 ATGGCGTTAACTGGAAAAAAGGTTTTGGCATTGGCCAGAAGCGAGTTACAGCAAGCTCATTATGGACTTAGTTTCCGGAGATTCTTTTCATTCTTTCCTTCCTTCTTTTCCTCTGATCCCTCGATTTCTATTTCGAATCCTCTGCTTCTCAGGTTGCTTCAGGAGCCAACTTCGTCTGTCAAATCCGTGCTCGATTCCCAGAAAAATGCTTTTCTCTGTAGTTCCCGTTTTTCCTTGAATGCCCTCGTTGCGTCTCTTATATCTTCTTCGTCGCCTAAGAAGGCTCAGCTGGGAAAGAAAAGCTATGGATTCTGTGAGTTTTGGAATGGAAATTTGGAGAAAATGAGCAAAGTAAATGAGAGGGATCCTGATTTTTACATCGACCTGATACGTCTATGCGGAGAGCTTCAAAATTCCCCTCTTGCAATGCGTGTCTTCACTGCTATGGAATTTCAAGGAGTTAAACCCACGGTGACTGCTTTCAATTCACTCATAGAGGCTTGTATATCTTCCCATAATATGATAACTGCCTTTAGCATATTTGAAGTAATGAAGAACTCTGAAAGTTATAAACCCAATACTGACACTTTTTATTATTTCATTTCCGCGTTCGCCAAATTGCATGATATCAATTCTATGCAATCATGGTATTCAGCCAAAAAGGCGTTTGAATTCTCTCCTGACCTTCGAACTTATGAAGCTCTTATACATGGTAGTGTGAAATCAAAATGCTTTGACTTTGCTGTTAAATGTTTTGAGGAAATGATGATATCTGACATTGTGCCCAACACAATCATATTGGAGAATATGCTTGAAGGGTTCTTTAGGAGGAAAAATTTGGATGAAGTGAAGAAGTTCTTAAATGTTGTGCTTGACAAAGGATGGGAGATCAATTGGAATGTGGTAGAGAAATTCATTCCAATATGGTTTGAATCTGGGGAGTTGGAAGGGATGGAGGAGATCCTTGCCAAGCTAGATAAATCGAATTCGGCTCTCGATGGCAGATCGACATAA 1014 40.04 MALTGKKVLALARSELQQAHYGLSFRRFFSFFPSFFSSDPSISISNPLLLRLLQEPTSSVKSVLDSQKNAFLCSSRFSLNALVASLISSSSPKKAQLGKKSYGFCEFWNGNLEKMSKVNERDPDFYIDLIRLCGELQNSPLAMRVFTAMEFQGVKPTVTAFNSLIEACISSHNMITAFSIFEVMKNSESYKPNTDTFYYFISAFAKLHDINSMQSWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAVKCFEEMMISDIVPNTIILENMLEGFFRRKNLDEVKKFLNVVLDKGWEINWNVVEKFIPIWFESGELEGMEEILAKLDKSNSALDGRST 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29259847 29262206 + Lsi04G022210.1 Lsi04g02221 662270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02221 337 Gene3D Tetratricopeptide repeat domain 112 336 IPR011990 GO:0005515
Lsi04g02221 337 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 332 - -
Lsi04g02221 337 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Lsi04g02221 337 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Lsi04g02221 337 Pfam PPR repeat 231 256 IPR002885 -
Lsi04g02221 337 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 34 332 - -
Lsi04g02221 337 Pfam Pentatricopeptide repeat domain 126 168 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02221 - - - csv:101208133 471.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02221 Lsi-Chr4:29259847 Lsi02g02553 Lsi-Chr2:32011709 6.41E-09 dispersed
Lsi04g02221 Lsi-Chr4:29259847 Lsi04g00798 Lsi-Chr4:7544236 5.40E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g335 . . . . . . . . . . . . Car09g00482 . . . Cpe06g00417 . . . . . . . . . . . . . . . . . . Lsi04g02221 Csa03g04433 . . . . . . . . . . Sed13g2118 . Cmo09g00540 Cma09g00550 . . . . . Bhi09g02414 Tan01g3775 Cmetu04g1652 . Hepe01g2115 Mch11g0653 . . . . . . . . . . . Cme04g00298
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013351 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02221 Lsi_Chr04 FPKM 128.298065 140.640472 88.45768 83.144844 86.978104 85.069389 84.507652 53.609879 56.065029 60.780708