Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02230 ATGCGCCCCTGGTTTCGAACTGTTAATTCCAATAGTTCGAGTTCTAATAGCGATCCAACCAATCGGAGAATTAACGCTTTCGTTAGGCATCTGGTTGAACCATCTTCATCCGCCATGGCTGATTCACTCTCTGCTTCTCCCACTTCTTCCTTGCACACTGATTCGGTTTTCTCTCATGTTGTTCGTGCTCCTGAAGATCCTATTCTCGGGGTGACTGTTGCATACAACAAAGATCCGAGCCCGAACAAGTTGAATTTGGGCGTCGGTGCTTACCGGACAGAGGAAGGAAAACCTCTCGTCTTAAACGTTGTCAGAAAAGCGGAGCATCAACTTGTCAATGATAGTTCACGAGTTAAGGAGTATCTTCCGATTGTGGGATTGGCAGAGTTTAATAAACAGAGTGCTAAGCTTATTTTTGGCGCTGACAGCCCTGCTATCCTTGAGAACCGTGTTACAACTGTTCAATGCTTGTCTGGTACTGGATCACTGAGGGTTGGTGGTGAATTTTTGGCAAGACATTATCATGAGCGGCTAATATACATTCCCCAGCCAACATGGGGAAACCACCCCAAAGTTTTTAGTCTGGCTGGTCTGTCTGTAAAAACTTACCGATATTATGATCCCTCAACACGGGGGTTGGATTTTCAAGGCCTCTTGGAAGATCTTGGTTCTGCTCCATCTGGAGCTATAGTTCTGCTTCATGCATGTGCTCATAACCCAACTGGTGTCGATCCGACCCTTGAACAATGGGATCAGATCAGGAAGTTGATGAGATCAAAACAGCTTTTACCTTTCTTTGACAGTGCTTATCAGGGTTTTGCCAGTGGAAGTTTGGATGCGGATGCACAACCTGTGCGCTTATTTGTTGCTGATGGAGGTGAATTGTTTGTAGCCCAGAGTTATGCAAAAAATTTGGGGCTCTATGGCGAACGTGTTGGCGCTTTAAGCATTGTCTGCAAGAATGCTGATGTCGCAAGCAGGGTAGAGAGCCAGCTAAAACTAGTGATAAGGCCCATGTACTCAAACCCACCCATTCACGGAGCATCTATTGTTGCTACAGTCCTGAAGGACAGGGATTTGTTCAATGAATGGACTATTGAGTTGAAGGCCATGGCAGACCGTATTATTAGCATGCGCCAGCAACTTTTTGATGCCTTGCGCGCTAGAGGTACACCTGGTGATTGGAGTCACATCATCAAGCAGATTGGAATGTTTACTTTCACAGGATTGAATTCGGAACAAGTTAGCTTCATGACCAAAGAATATCACATTTACATGACCTCTGATGGGAGAATCAGCATGGCAGGTTTGAGCTCAAGGACTGTACCACACCTTGCGGATGCAATCCATGCAGCCGTTACTCGTGTCGTCTAA 1374 45.85 MRPWFRTVNSNSSSSNSDPTNRRINAFVRHLVEPSSSAMADSLSASPTSSLHTDSVFSHVVRAPEDPILGVTVAYNKDPSPNKLNLGVGAYRTEEGKPLVLNVVRKAEHQLVNDSSRVKEYLPIVGLAEFNKQSAKLIFGADSPAILENRVTTVQCLSGTGSLRVGGEFLARHYHERLIYIPQPTWGNHPKVFSLAGLSVKTYRYYDPSTRGLDFQGLLEDLGSAPSGAIVLLHACAHNPTGVDPTLEQWDQIRKLMRSKQLLPFFDSAYQGFASGSLDADAQPVRLFVADGGELFVAQSYAKNLGLYGERVGALSIVCKNADVASRVESQLKLVIRPMYSNPPIHGASIVATVLKDRDLFNEWTIELKAMADRIISMRQQLFDALRARGTPGDWSHIIKQIGMFTFTGLNSEQVSFMTKEYHIYMTSDGRISMAGLSSRTVPHLADAIHAAVTRVV 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29337966 29345569 - Lsi04G022300.1 Lsi04g02230 662279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02230 457 Gene3D Aspartate Aminotransferase, domain 1 60 449 IPR015422 GO:0003824
Lsi04g02230 457 Pfam Aminotransferase class I and II 82 449 IPR004839 GO:0009058|GO:0030170
Lsi04g02230 457 Gene3D - 116 357 IPR015421 GO:0003824
Lsi04g02230 457 SUPERFAMILY PLP-dependent transferases 54 455 IPR015424 -
Lsi04g02230 457 MobiDBLite consensus disorder prediction 1 21 - -
Lsi04g02230 457 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 300 313 IPR004838 GO:0003824|GO:0009058|GO:0030170
Lsi04g02230 457 CDD AAT_like 84 437 - -
Lsi04g02230 457 PRINTS Aspartate aminotransferase signature 330 355 IPR000796 GO:0006520|GO:0008483
Lsi04g02230 457 PRINTS Aspartate aminotransferase signature 398 416 IPR000796 GO:0006520|GO:0008483
Lsi04g02230 457 PRINTS Aspartate aminotransferase signature 262 274 IPR000796 GO:0006520|GO:0008483
Lsi04g02230 457 PRINTS Aspartate aminotransferase signature 231 250 IPR000796 GO:0006520|GO:0008483
Lsi04g02230 457 PANTHER ASPARTATE AMINOTRANSFERASE 54 456 IPR000796 GO:0006520|GO:0008483
Lsi04g02230 457 PANTHER ASPARTATE AMINOTRANSFERASE 54 456 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02230 K14454 GOT1; aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] - csv:101213892 860.522
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01296 Lsi-Chr4:20464905 Lsi04g02230 Lsi-Chr4:29337966 1.52E-24 dispersed
Lsi04g02230 Lsi-Chr4:29337966 Lsi11g01725 Lsi-Chr11:25321691 1.33E-138 dispersed
Lsi04g02230 Lsi-Chr4:29337966 Lsi08g01232 Lsi-Chr8:20780125 2.86E-166 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g325 Blo01g01369 Blo12g00761 . Bda03g00424 . Bpe02g00176 Bma04g00400 Bma01g02550 . . Cma01g01602 . Car09g00487 . . . Cpe06g00422 . . . . . . . . . . . . . . Cone4ag1531 Cone7ag1422 . . Lsi04g02230 Csa03g04441 Chy04g00259 . . . . . . Bpe04g00072 . . Sed05g1604 Cmo01g01649 Cmo09g00545 Cma09g00555 . Car01g01222 . . Cpe02g00376 Bhi09g02426 Tan01g3784 Cmetu04g1897 . Hepe01g2123 Mch11g0661 . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . Cme04g00290
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004923 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02230 Lsi_Chr04 FPKM 0.710652 0.449047 2.7241 2.869034 18.149931 18.112923 21.184484 5.923355 4.723835 5.963676