Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02232 ATGTCAGGTGGCGGTTGCAGCATAGTTTGGTTCAGAAGAGATCTCAGGGTTGAAGATAACCCAGCTCTTACCGCCGCCGTCAGGGCTGGCGCCGTCGTCGCCGTCTTCATCTGGGCTCCGGAGGAAGAGGGTCACTATTATCCCGGTAGGGTCTCCCGATGGTGGCTCAAACAGAGCTTAGCCCATCTTGATTCCTCTCTTAGAAGCCTTGGTACTTTTCTTCTCACTAAGAGATCCACCAACACCATTTCTGCTTTGCTTGACGTCGTTAAAGCCACTGGTGCTTCTCAACTCTTCTTCAATCACTTATACGATCCTTTGTCGCTCATTCGGGATCATCGAGCGAAGGAGGTTTTATCTGCTCAAGGCATAGGTGTGAGGTCCTACAATGCGGATTTACTGTACGAACCATGGGATGTTAAGGATGCCAACGGCAATCCATTTACTACCTTTGCTGGTTTCTGGGAGAGATGTCTCAGCATGCCTTGTGATCCAGAGGCACCACTACTCCCACCTAAGAGAATAATTTCAGTCAATGCTGTGAAGTTTGAATCTAAGCTTCTTCTCCTTTCACATAATTGGTGGAAAACAGAGACAATTATACTTCCCACACATGATTTTACACTCTTATATGACTATATGAGAGAGTCCGGCCATCCTACTTTAATGTTATTTGCTTCTGAGATGGTTACTTGCAAACTAGTAGACCATGAAAAGGAGGTTTCTTCTGATGTAGATGGGCTTGCCGTGGAAATAAACCATTGCATATTTTCACATTTGAAGTATGTGCTTGCTGTTCATTCATTGTTTCTCTTTTATCTAAATGGAAAGCTACTTGGGAATGAAGCATTTTGTGGGAACTTTAACTTCCTCCCCATATATTGCCTCTATCTCTTCTATCGAAGGCATGTACTGTTTTTGAACATCATCTGTCTTAAAAGATTCACTCTACATATTGTCTTTGCTCCTTCAGGTGATGCATCTAGGTGCCCATGTGACACGTTGGTATTTGAAGATGAATCTGAGAAGGGAAGCAATGCGCTTCTCTCCCGAGCATGGTCTCCTGGATGGAGCAACGCAGATAAAGCTTTGACCACGTTCATCAATGGACCATTACTTGAATACTCAAAAAATCGTAGGAAGGCGGATAGTGCAACCACCTCGTTTCTGTCTCCCCACTTGCATTTTGGAGAGGTGAGTGTGAGAAAAGTGTTTCATCTTGTTCGAATGAAGCAGGTTTTATGGGCCAATGAAGGAAACAAGGCCGGCGATGAGAGTGTCAACTTGTTTCTCAAGTCTATTGGACTCAGAGAATATTCCAGATACATGAGTTTCAACCATCCTTACAGTCATGAAAGGCCTCTTCTTGGGCATCTTAAATTCTTTCCCTGGGTTGTGGATGAAGGCTATTTTAAGGCATGGAGGCAAGGAAGGACTGGTTATCCATTAGTGGATGCTGGTATGAGGGAATTGTGGGCTACGGGGTGGCTGCATGATCGGATTCGAGTTGTCGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACTCTCTTGGATGCAGACCTCGAGAGTGATGCGCTTGGTTGGCAATACATATCTGGCACACTTCCCGATGGCCGTGAATTTGATCGCATTGACAATCCACAGCTGCAACTCTATCCTCTGCAATTGACTAGACTTGAGTCCTCAATTTGCTTGCTCATGCTCTTGTATGACCTGGAGGGTTATAAATTCGACCCAAATGGAGAATATGTCCGGAGATGGCTTCCTGAACTTTCTAGATTGCCCACTGAATGGATTCATCACCCATGGAATGCACCTGAATCTGTGCTCCAAGCTGCTGGGATTGAGCTTGGATCAAACTACCCTCTTCCCATCGTAGGACTGGATGCAGCTAAAGCTAGGTTGGAAGAAGCGCTGTCCGAGATGTGGCAACAAGAAGCGGCTTCAAGGGCTGCAATTGAGAATGGAACTGAAGAGGGACTCGGGGACTCTTCTGAGTCGATCCCAATTGCATTTCCTCAAGACATAGCAATGGAGGAGGAAGACCTTGAGCCTGCAAGGATGAACGCTCATACAGTTCGGTGCTACGAGGATCAGATGGTCCCGAGCATGACTAGTTCGGTGAGATTAGAAGATGAACCTTCTTTAAATATTCAAAGTACAGCAGAAGATGGCAGAGCAGAAGTACCTACAAATGCAAATCTACTCCAAGAGCCCACCAGAGATGCAGTAAACCCAAGAGTTCTGCCAACTGCTCCGACACAGACTCGACGCCCCTATACCGCAGGTATAGCCCTAAGAACTTCTGTTGAAGACTCCACTGCCGAGTCTTCTTCCAGTAGTGATGTTAGAAGAGAGAGAGATGGAGGTGTGGTTCCGGTTTGGTCTCCACCAAGTTCAAGTTACACGGAGCAGTTTGTGGTTGATGAAAATGGCATCGGAACAAGCTCTTCGTTCTTGCAGGGGCATCAACAGACTCATCAAATAATCAATTGGAGGCGGCTATCTCAGACTGGGTGA 2556 46.01 MSGGGCSIVWFRRDLRVEDNPALTAAVRAGAVVAVFIWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTFLLTKRSTNTISALLDVVKATGASQLFFNHLYDPLSLIRDHRAKEVLSAQGIGVRSYNADLLYEPWDVKDANGNPFTTFAGFWERCLSMPCDPEAPLLPPKRIISVNAVKFESKLLLLSHNWWKTETIILPTHDFTLLYDYMRESGHPTLMLFASEMVTCKLVDHEKEVSSDVDGLAVEINHCIFSHLKYVLAVHSLFLFYLNGKLLGNEAFCGNFNFLPIYCLYLFYRRHVLFLNIICLKRFTLHIVFAPSGDASRCPCDTLVFEDESEKGSNALLSRAWSPGWSNADKALTTFINGPLLEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRMKQVLWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQLQLYPLQLTRLESSICLLMLLYDLEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDAAKARLEEALSEMWQQEAASRAAIENGTEEGLGDSSESIPIAFPQDIAMEEEDLEPARMNAHTVRCYEDQMVPSMTSSVRLEDEPSLNIQSTAEDGRAEVPTNANLLQEPTRDAVNPRVLPTAPTQTRRPYTAGIALRTSVEDSTAESSSSSDVRRERDGGVVPVWSPPSSSYTEQFVVDENGIGTSSSFLQGHQQTHQIINWRRLSQTG 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29366679 29371554 + Lsi04G022320.1 Lsi04g02232 662281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02232 851 Coils Coil 640 660 - -
Lsi04g02232 851 PANTHER CRYPTOCHROME 324 773 IPR002081 -
Lsi04g02232 851 PANTHER CRYPTOCHROME 1 193 IPR002081 -
Lsi04g02232 851 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Lsi04g02232 851 Gene3D HUPs 1 159 IPR014729 -
Lsi04g02232 851 MobiDBLite consensus disorder prediction 731 751 - -
Lsi04g02232 851 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 174 IPR036155 -
Lsi04g02232 851 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 339 658 IPR036134 -
Lsi04g02232 851 MobiDBLite consensus disorder prediction 731 811 - -
Lsi04g02232 851 Pfam FAD binding domain of DNA photolyase 430 562 IPR005101 -
Lsi04g02232 851 Pfam FAD binding domain of DNA photolyase 586 651 IPR005101 -
Lsi04g02232 851 ProSitePatterns DNA photolyases class 1 signature 2. 499 518 IPR018394 -
Lsi04g02232 851 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 448 672 - -
Lsi04g02232 851 ProSitePatterns DNA photolyases class 1 signature 1. 479 491 IPR018394 -
Lsi04g02232 851 Gene3D - 334 447 - -
Lsi04g02232 851 Pfam Blue/Ultraviolet sensing protein C terminal 681 793 IPR020978 -
Lsi04g02232 851 Pfam DNA photolyase 7 161 IPR006050 -
Lsi04g02232 851 PANTHER CRYPTOCHROME-1 324 773 - -
Lsi04g02232 851 PANTHER CRYPTOCHROME-1 1 193 - -
Lsi04g02232 851 MobiDBLite consensus disorder prediction 761 789 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02232 K12118 CRY1; cryptochrome 1 - csv:101213649 978.008
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02737 Lsi-Chr2:33641260 Lsi04g02232 Lsi-Chr4:29366679 2.83E-07 dispersed
Lsi04g02232 Lsi-Chr4:29366679 Lsi04g02180 Lsi-Chr4:28886116 1.56E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g409 . Blo12g00706 . . Bpe02g00107 Bpe04g00446 . . . . Cma01g01604 Cma09g00509 Car01g01224 . . Cpe06g00379 . . . . . . . . . . . . . . . Cone4ag1336 Cone7ag1593 . . Lsi04g02232 Csa03g04443 Chy04g00257 . . . Bda11g00766 . . . . . . Cmo01g01651 Cmo09g00506 . . . Car09g00443 . Cpe02g00374 Bhi09g02431 . . . . . . Cla11g01379 Cam11g1436 Cec11g1464 Cco11g1460 Clacu11g1595 Cmu11g1414 Cre11g1834 . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005916 1 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02232 Lsi_Chr04 FPKM 3.733132 3.528325 9.944939 9.880732 4.687212 4.908143 5.664483 31.203119 31.824821 31.873785