Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02233 ATGGATAAGCTGTGCTGTTTTAATGCTTCATACTCTGGGATTAGGTCCGCATTGAATTATGGTAAAGGAAGAAGCCATGGGGGGATAATCAAGTTTGGGTTCTGCCTGGTCAAAGGGAAAGCTAATCATCCCATGGAAGATTACCATGTTGCTAAGTTTGTCCAGATTCAAGAACATGAATTGGGGCTCTTTGCTATTTATGATGGCCATTTAGGAGAAAGTGTCCCTGCCTACTTACAAAAGCATTTGTTTTCTAATATCTTGAAAGAGGAAGAGTTTTGGGTTGATCCCAACAGCTCCATCTCAAAAGCATATGAGAAGACTGACCAGGCGATTCTATCCCACAGCTCTGACTTGGGTCGTGGAGGATCAACTGCTGTTACTGCTATTCTGATTAATGGTCGAAGACTATGGGTGGCTAATGTTGGAGATTCACGTGCAGTTCTTTCTAGAGGGGGTGAAGCTGTACAGATGACCATCGATCATGAGCCGAATACAGAACGCCGCATCATTGAGAATAAAGGTGGCTTCGTTTCAAACATGCCAGACAAGAGTCTCAAATCTCACCTGCGATCAGATCCTGACATACGTGATATTAATGTAGACGCCAACACGGACATATTAATTCTCGCCAGCGACGGTCTTTGGAAGCTTTCATTCCTTTGTCTCTGTTGCATAAACACTAATACATTTACAGCAGCAAAGGGTGCAAAACCAATGGAGAAAAAATTTCTTTCATTACAAAGTCGTTCTAGAATCATCCATTTACATCGACATTTTTGTTCTTCTTATGTCATGGCCAATCAAGAAGCGGTCGATATCGCACGAAGAATTAAAGACCCATTGAAGGCTGCTAAGCAGTTAATAACCGAGGCTTTGGAGAAAGAGAGTAAAGATGATATATCATGCATTGTGGTTAGATTTAGGTGA 930 41.83 MDKLCCFNASYSGIRSALNYGKGRSHGGIIKFGFCLVKGKANHPMEDYHVAKFVQIQEHELGLFAIYDGHLGESVPAYLQKHLFSNILKEEEFWVDPNSSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGRRLWVANVGDSRAVLSRGGEAVQMTIDHEPNTERRIIENKGGFVSNMPDKSLKSHLRSDPDIRDINVDANTDILILASDGLWKLSFLCLCCINTNTFTAAKGAKPMEKKFLSLQSRSRIIHLHRHFCSSYVMANQEAVDIARRIKDPLKAAKQLITEALEKESKDDISCIVVRFR 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29379074 29383359 + Lsi04G022330.1 Lsi04g02233 662282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02233 309 PANTHER PROTEIN PHOSPHATASE 2C 265 308 IPR015655 GO:0004722|GO:0006470
Lsi04g02233 309 Gene3D - 19 309 IPR036457 -
Lsi04g02233 309 CDD PP2Cc 30 308 IPR001932 -
Lsi04g02233 309 PANTHER PROTEIN PHOSPHATASE 2C 10 218 IPR015655 GO:0004722|GO:0006470
Lsi04g02233 309 SUPERFAMILY PP2C-like 265 308 IPR036457 -
Lsi04g02233 309 Pfam Protein phosphatase 2C 40 217 IPR001932 -
Lsi04g02233 309 SMART PP2C_SIG_2 42 308 IPR001932 -
Lsi04g02233 309 ProSiteProfiles PPM-type phosphatase domain profile. 31 308 IPR001932 -
Lsi04g02233 309 SUPERFAMILY PP2C-like 25 217 IPR036457 -
Lsi04g02233 309 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 265 308 - -
Lsi04g02233 309 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 10 218 - -
Lsi04g02233 309 SMART PP2C_4 23 306 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00950 Lsi-Chr3:18195579 Lsi04g02233 Lsi-Chr4:29379074 6.57E-28 dispersed
Lsi04g02233 Lsi-Chr4:29379074 Lsi11g01704 Lsi-Chr11:25194324 3.96E-88 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02233 K17506 - csv:101213414 480.715