Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02234 ATGCCATCCTGTTGCAACTTCACCAAGTCGAGAAATCGATGTTTACGTTCTACCTTCATCAAATGTGGACTTCAATCCACCACCACAGACCTTAAAGATGGTTCCTTCATACATTGCTGGGTGCCCAAAACTCAGGATCAACACAGACCTAACCTCCTCCTCATCCATGGCTTCGGGACCAATGCATTGTGGCAATGGGGAAACGCCATACGCCTCTTCACCCCTCACTTCAATGTGTATGTACCAGACCTCGTCTTCTTTGGGGACTCGATCACGACTCGGCCAGAGCGGTCTGACTCGTTCCAAGCCGAGTGCATCATGCGTGTAATGGCTGCCAACTCAGTGCTGAAGCTGAGCCTCATCGGATTGAGCTACGGTGGGTTTGTTGGATATTGCTTGGCGGTGAGATATGGTGAGGTGGTAGAGAGGGTGGTGATTTGTAGTGCAGGAGTTTGTATGGAAGAGAAGGACCTGAGGGAAGGGTTATTCAGAATCTCGGACTTGGAGGAGGCAGCCAAGATTTTGGTGCCCCAAGATCCTAAGAAATTGAAGGAATTGGTGAAGTTTGCCCTCTTCAGGCCTCCTCCACTGGCATTGCTGCCCTCTTGTTTACTCGCTGATTTCATTCAAGCTATGTGCAGTGAATATGTAGAAGAAAGGAAAGAGTTGATCAAAGCTATTCCAAAAGACAGGAAACTATCAGACATCCCCAAGATCCAGCAGGCTGGTTTCATCTTCTCACATGCATTCATTTCATTTCATTTCTTCAATTTTTTTTTCTTTTCTTCTAAATCATATGCAAAACCACCTCTGCATTTGGGGGAGAGTGCTCAACTGGTAGTAATCAAGAATGCAGGGCATGCTTGTGATTTGGAAAAGCCCAAGGAGTACTATCATCACTTGAAGTCCTTCCTCGGCATCAAGCAACAAAACCATAAATGA 942 46.39 MPSCCNFTKSRNRCLRSTFIKCGLQSTTTDLKDGSFIHCWVPKTQDQHRPNLLLIHGFGTNALWQWGNAIRLFTPHFNVYVPDLVFFGDSITTRPERSDSFQAECIMRVMAANSVLKLSLIGLSYGGFVGYCLAVRYGEVVERVVICSAGVCMEEKDLREGLFRISDLEEAAKILVPQDPKKLKELVKFALFRPPPLALLPSCLLADFIQAMCSEYVEERKELIKAIPKDRKLSDIPKIQQAGFIFSHAFISFHFFNFFFFSSKSYAKPPLHLGESAQLVVIKNAGHACDLEKPKEYYHHLKSFLGIKQQNHK 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29386583 29388154 + Lsi04G022340.1 Lsi04g02234 662283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02234 313 Pfam alpha/beta hydrolase fold 50 157 IPR000073 -
Lsi04g02234 313 Gene3D alpha/beta hydrolase 15 313 IPR029058 -
Lsi04g02234 313 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 4 305 - -
Lsi04g02234 313 PANTHER SI:DKEY-122A22.2 4 305 - -
Lsi04g02234 313 SUPERFAMILY alpha/beta-Hydrolases 23 305 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02234 - - - qsu:112033887 396.741
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02234 Lsi08g00965 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02234 Lsi-Chr4:29386583 Lsi07g00150 Lsi-Chr7:1600852 4.11E-110 dispersed
Lsi01g00777 Lsi-Chr1:6104485 Lsi04g02234 Lsi-Chr4:29386583 8.33E-97 wgd
Lsi04g02234 Lsi-Chr4:29386583 Lsi08g00965 Lsi-Chr8:18144523 6.32E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g172 . . . . Bpe02g01564 . . . Cmo05g00422 . . Cma05g00410 . . Sed11g0859 . . Bhi04g01523 Tan02g1575 Cmetu03g2273 . Hepe08g1441 . Lcy13g2228 . . . . . . . . . . Cone20ag0294 Lsi04g02234 . . . Blo17g00271 Blo18g00258 Bda01g01351 . Bpe14g00283 . Bma01g00907 . . . . . . . Car05g00345 Cpe11g00350 . . . . . . . . Cla08g00981 Cam08g1430 Cec08g1008 Cco08g1131 Clacu08g1135 . Cre08g0919 . . Chy03g00651 .
Vvi18g411 . . . . . . . . Cmo05g00523 . . . . . Sed04g0141 . . Bhi04g00761 Tan02g2392 Cmetu03g0357 . Hepe10g0498 . Lcy13g1562 Cla08g01109 Cam08g1562 Cec08g1136 Cco08g1262 Clacu08g1266 . Cre08g1046 Cone4ag1334 . . . Lsi04g02234 . . Cme03g01864 Blo17g00119 Blo18g00257 . Bda13g01402 . Bpe14g00453 . Bma02g00142 . . . . Cma05g00500 . . Cpe11g00437 . Bhi09g02434 . . . . Mch11g0665 . Cla11g01381 . Cec11g1465 Cco11g1461 Clacu11g1596 Cmu11g1415 Cre11g1835 Lsi08g00965 Csa02g02150 Chy03g01368 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010572 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02234 Lsi_Chr04 FPKM 4.478144 4.619165 11.567614 12.62689 20.884636 17.792006 16.584997 1.055722 1.243687 1.218701