Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02235 ATGGCGAAAGAGAGAGAACTACTCGTTTACTCGGCTAGATTGGCGGAGCAAGCTGAGAGATACGAAGAGATGGTCGAGGAAATGGAGAAAGTTGCAAAGTTAAACGTGGAATTGACTGTAGAAGAGAGAAATCTGCTATCTGTTGGCTATAAGAATGTAATAGGAGCTAGACGAGCTTCCTGGCGTATTTTGTCTTCAATTGAACAGAAGGAAACTACCAAACATAATGAGAAGAATGTGGAACGGATAATTGGTTACAGGCATCGGGTTGAAGATGAGCTCTCTAAAATATGCAGTGACATATTGTCGATCATTGACCAGCATCTCCTTCCATGTTCCTCAGCTGGAGAATCTACTGTATTCTACCATAAGATGAAAGGAGACTATTGTCGGTATTTGGCTGAGTTTAAATCTGGTGATGAGCGCAAACAAGCTGCGTCTGCAATTGCTAACTCTGATTTGTCTCCAACTCATCCTATAAGACTTGGCTTGGCTCTGAACTTCTCTGTTTTCTACTTTGAGATATTGAATTCCCCTGAAAGGGCCTGCCACCTTGCCAAGCAGGCCTTTGATGAGGCTATTGCAGAACTTGACAGTCTCAATGAAGAATCCTACAAGGACAGTACCCTTATTATGCAGCTCCTTAGGGACAACCTGACCCTGTGGACTTCTGATCTTCCAGACGAAGGTGGAGAGCAGTCCAATGCCGATGAACTTTAG 720 43.75 MAKERELLVYSARLAEQAERYEEMVEEMEKVAKLNVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKETTKHNEKNVERIIGYRHRVEDELSKICSDILSIIDQHLLPCSSAGESTVFYHKMKGDYCRYLAEFKSGDERKQAASAIANSDLSPTHPIRLGLALNFSVFYFEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSNADEL 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29388901 29392554 - Lsi04G022350.1 Lsi04g02235 662284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02235 239 PIRSF 14-3-3 1 236 IPR000308 -
Lsi04g02235 239 ProSitePatterns 14-3-3 proteins signature 2. 205 224 IPR023409 -
Lsi04g02235 239 PANTHER 14-3-3-LIKE PROTEIN GF14 OMICRON 3 238 - -
Lsi04g02235 239 SUPERFAMILY 14-3-3 protein 4 225 IPR036815 -
Lsi04g02235 239 Pfam 14-3-3 protein 12 223 IPR023410 -
Lsi04g02235 239 Gene3D - 1 236 IPR036815 -
Lsi04g02235 239 Coils Coil 11 34 - -
Lsi04g02235 239 PRINTS 14-3-3 protein zeta signature 169 195 IPR000308 -
Lsi04g02235 239 PRINTS 14-3-3 protein zeta signature 142 168 IPR000308 -
Lsi04g02235 239 PRINTS 14-3-3 protein zeta signature 196 225 IPR000308 -
Lsi04g02235 239 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Lsi04g02235 239 PANTHER 14-3-3 PROTEIN 3 238 IPR000308 -
Lsi04g02235 239 Coils Coil 183 203 - -
Lsi04g02235 239 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Lsi04g02235 239 SMART 1433_4 5 236 IPR023410 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02235 Lsi08g00896 CCT
Lsi04g02235 Lsi08g00896 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02235 Lsi-Chr4:29388901 Lsi11g01569 Lsi-Chr11:23995462 7.29E-133 dispersed
Lsi04g00368 Lsi-Chr4:3674392 Lsi04g02235 Lsi-Chr4:29388901 5.96E-107 transposed
Lsi04g02235 Lsi-Chr4:29388901 Lsi08g00966 Lsi-Chr8:18146289 7.67E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02235 K06630 - csv:101213169 419.853