Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02236 ATGGCAAAATTCAATTGCTTCTCTGGCCGGACAGGGAAAAAGAAGAAAACCAAGAGTGATTTAGAATCGCAAAAACCTGCTGAATTGAATTACTTGACAAAAACTTTGCAAGTCAGCATCCATCACTCTGAGGAGCCTTTTCAAGTTGGAGAAGGGAAGTCGTCTACTCTGGACGTTTCAATTCTGTATCCATCTGAGGATAATTCTAAGCTGGATGTTAAGGTAATGAACCATGAGAGTCCTGCAGCAGGAGGAGCAGTAGAAGCTGCATATGAAGGGGAAGATGAGCGTGATGACAACTCGATCAAGCGGAACCTTTCTGATATTGATCTCCCTGCTCAAGACACCTGTGTGGAAGAATTTGAGTTTCAATTTTCTAGTTCAGTGGGGAAACAATTTGATAAGATCATTATTGAAGGTGAAGGTGAAGGTGAAGGTGGTGAAGGAGTAGGAGGGGTTGATGCGATCCAAAGTGGGCATGTTAGTGATCCTGGAATTGGTAAGGCAGTATCTTGGGCATCACCAAAACTTAAACGGTCCTGCTCGAACCTGGAAACCAGGGATGTGCATAGAAATTTATCTCATCAGTTGCCTCCAAAGTCTCAGTCTTTCGAAAAACTGCAAGAATTGGCAGACGAAATGAGGGATTATGTTGATCCAGGCAGTCCAGGGTCTATTATGACCCATCACAGTGCTGATAAAGTCATGTTAAAGAAGCGTTCTTCGAGCCAGATTCTTCCTTCCAGAAGTAGAAGGTTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGAAACCTTCAAAAGCCGTGGACTACCAAGGCTCCTCCCACCACCTTTGCTTTCAACCAGCAAGGTGGGTATTGCTCTGACAATTTTGAGCCGAACAGAGCAGCAGGGAAAAGTATGATGGAATCACCTGGATCTTTTACTGAGGAAACCTGGCCCAAAGGCCCGAGTAACAAGAAAAACGATGATCAGGATCAGGAGAATTTGTGTAATGCAGTCTCTGGTTTATGGCCACAAAATCAGTGGGTTGCATTTTCAGCAGAATCATCTTCCCTTAGAAGAGTGGATGAGTGGGTGAAGGATCTTCAAATCGAACCGTGTCTTTCAATGGATGAGGTTAGGGGTGACAACGGTCAAGATACTTTCTTCCCACCCTCTCCCGAGAGAACTGCAACTCATACGCCTCGACGTGGAGAACCGAATCTGACAGAAGAGATTTTGTATGCCAATAGTGTCATCCAGTCGTTGAATTCTTCCTCAACCGTGGCTCATATCTCTGGTATTGGCTTAAAAGCCATACCCACAATCTCACACCTATCCGGCCTTAGATCTGTCAATTTGTCCGGCAACCTCATAGTTCACATTAACCCTGGATCACTGCCCAAGGGACTGCACACTCTCAATTTGTCCAGGAACAAGATCAGTGCTATTGAAGGACTAAAAGAATTAACACGACTTCGGATACTTGATCTGAGTTACAATCGCATATCTCGCATAGGACATGGTTTGTCAAACTGTGCGATTATCAAGGAACTCTATCTTGCTGGCAACAAGATTAGTGATGTTGAGGGACTACATCGAATCTTGAAGCTGACAGTTCTCGACCTAAGCTTTAACAAGATTTCAACAACCAAAGCTCTGGGCCAACTTGTTGCCAACTATAACTCTCTTCAAGCTCTTAATCTTTTGGGGAATCCAATTCAAAATAATGTGAGCGATGACCAGCTACGCAAGGCAGTTGCTGGCCTTCTTCCAAACCTCGTTTATCTAAACAAGCAAGCCATCAAAGCACAGAGAGCTCGAGAAGTCGCAACTGATAGCATTGCCAAAGCTGCACTAGGGAACAGTAGTTGGAGTTCTCGTAGAAGAACATCAAGGAAAACAAGCCATATCACATCATCTTCCATTAGTGGGCACAGAAGCACTGCAAGTGTCGCACACAAAGGCAGGCATAGATCAAAAGCGCCAACCGTTCGCCATTCTTCTCTGGGGATGGCTTCATCAGCTCTTGCCTCATCATCTCGTTAG 2031 44.85 MAKFNCFSGRTGKKKKTKSDLESQKPAELNYLTKTLQVSIHHSEEPFQVGEGKSSTLDVSILYPSEDNSKLDVKVMNHESPAAGGAVEAAYEGEDERDDNSIKRNLSDIDLPAQDTCVEEFEFQFSSSVGKQFDKIIIEGEGEGEGGEGVGGVDAIQSGHVSDPGIGKAVSWASPKLKRSCSNLETRDVHRNLSHQLPPKSQSFEKLQELADEMRDYVDPGSPGSIMTHHSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTTKAPPTTFAFNQQGGYCSDNFEPNRAAGKSMMESPGSFTEETWPKGPSNKKNDDQDQENLCNAVSGLWPQNQWVAFSAESSSLRRVDEWVKDLQIEPCLSMDEVRGDNGQDTFFPPSPERTATHTPRRGEPNLTEEILYANSVIQSLNSSSTVAHISGIGLKAIPTISHLSGLRSVNLSGNLIVHINPGSLPKGLHTLNLSRNKISAIEGLKELTRLRILDLSYNRISRIGHGLSNCAIIKELYLAGNKISDVEGLHRILKLTVLDLSFNKISTTKALGQLVANYNSLQALNLLGNPIQNNVSDDQLRKAVAGLLPNLVYLNKQAIKAQRAREVATDSIAKAALGNSSWSSRRRTSRKTSHITSSSISGHRSTASVAHKGRHRSKAPTVRHSSLGMASSALASSSR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29405712 29410953 + Lsi04G022360.1 Lsi04g02236 662285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02236 676 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 660 - -
Lsi04g02236 676 Gene3D Ribonuclease Inhibitor 402 505 IPR032675 -
Lsi04g02236 676 MobiDBLite consensus disorder prediction 375 399 - -
Lsi04g02236 676 MobiDBLite consensus disorder prediction 661 676 - -
Lsi04g02236 676 Gene3D Ribonuclease Inhibitor 506 602 IPR032675 -
Lsi04g02236 676 MobiDBLite consensus disorder prediction 295 327 - -
Lsi04g02236 676 MobiDBLite consensus disorder prediction 616 676 - -
Lsi04g02236 676 ProSiteProfiles Leucine-rich repeat profile. 486 508 IPR001611 GO:0005515
Lsi04g02236 676 SMART LRR_typ_2 484 507 IPR003591 -
Lsi04g02236 676 SMART LRR_typ_2 440 463 IPR003591 -
Lsi04g02236 676 Pfam Leucine rich repeat 442 497 IPR001611 GO:0005515
Lsi04g02236 676 SMART LRR_sd22_2 507 528 - -
Lsi04g02236 676 SMART LRR_sd22_2 462 483 - -
Lsi04g02236 676 SMART LRR_sd22_2 529 550 - -
Lsi04g02236 676 SMART LRR_sd22_2 484 506 - -
Lsi04g02236 676 MobiDBLite consensus disorder prediction 1 26 - -
Lsi04g02236 676 PANTHER NISCHARIN RELATED 3 660 - -
Lsi04g02236 676 SUPERFAMILY Outer arm dynein light chain 1 431 596 - -
Lsi04g02236 676 Pfam Leucine Rich repeat 531 543 IPR001611 GO:0005515
Lsi04g02236 676 ProSiteProfiles Leucine-rich repeat profile. 531 552 IPR001611 GO:0005515
Lsi04g02236 676 ProSiteProfiles Leucine-rich repeat profile. 464 485 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02236 - - - csv:101212929 1106.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02236 Lsi-Chr4:29405712 Lsi11g01497 Lsi-Chr11:23442252 1.11E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02236 Lsi_Chr04 FPKM 10.816517 9.145042 6.53813 5.727159 9.475858 7.390192 7.835671 10.351175 10.24254 9.354561