Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02237 ATGGCTTGGCGCCTTCTCGTCACCAACCTCAAATCTGCTCAAACCCTAACCCTAACAAACATCCTTCGCCATTCCTCTCCTTCCTTCTTCAACCACAAATTCCCATTTTCCACCTCCTTCCTCGTTACCAAACTCCCCAAGAAGTTCAGGAAGAAACGCAAGAAGCACGAAAGCCCTAGAACCAAGCTCGTCCAATCCCAATCCAATCGCATCTCTCACTTCGAGCGCATCCTCCAAACCGATTCCTTCTTCAGATTCCTTTTTAAGTCCAAAGATTTCCTCTCCAAGCAGACGGAGCACGTTCTTCGCCTCGACGATGCCGGCAAGCTTTATCGCGAGCTCGGCTTCCCGAGAGGTCGCAAAGTCGCTCGATCAATTGAGCGTCATCCGCTTCTCTTCGAACCCTATCGTCACGCCGATGGGAAAATGTGGTTCGGATTTACGGAGTTCATGGAGGGCTTGATTGAGGAGGAGAGGAGGATTATGGACTCGATGGAGCTGGATAGGGTTCGTACCGTGAGGAAGTTGCTGATGATGTCGGTGAATAAGCGAATTCCATTGACCAAAATCTACCACTGCAGGTCGGTGTTTGGAATTCCAGAGGATTTTAGAGATCGAGTGGGGAAGTATCCGGATTACTTCCGAATTGTGGTCGAAGATGATGGGAAGAGGGTGCTGGAATTGGTGAATTGGGACCCTCTATTGGCTGTTAGTCAGCTCGAGAAAGAGTTTGTGGTTAACGAGGATAAGGTGAAAAGGACATTCAAGTTTCCTGTGAAACATGGGAAGGATTTGGATTTGGATGAGGATGATACCAGGAAGTTGAATTTGTTGAATACACTTCCATTGGTTTCGCCATATTCAGATGGATCGAAGCTGGAACTTTGGACATTGGAAGCAGAGAAGTACAGGGTTGGCGTGGTGCATGAGTTCTTGAGCTTGACACTGGAGAAGAAGGCTTCTATTCATCATATTGTGGAGTTTAAGGAGGAGTTTAGCTTAACTAAGCATACTTATCAGATGCTTCTGAAGCAACCCAGAACCTTCTATCTGGCCGGGACGGAAATGAATTGGGTTGTTTTCTTAAAGGACGCATACAATGAAAATGGAGACTTGATTGAGAAGGACCCTCAAGTGGTTTTCAACGAGAAGCTGCGTAGATATGCTCAAATGCAGAAAATGGAATGA 1188 46.72 MAWRLLVTNLKSAQTLTLTNILRHSSPSFFNHKFPFSTSFLVTKLPKKFRKKRKKHESPRTKLVQSQSNRISHFERILQTDSFFRFLFKSKDFLSKQTEHVLRLDDAGKLYRELGFPRGRKVARSIERHPLLFEPYRHADGKMWFGFTEFMEGLIEEERRIMDSMELDRVRTVRKLLMMSVNKRIPLTKIYHCRSVFGIPEDFRDRVGKYPDYFRIVVEDDGKRVLELVNWDPLLAVSQLEKEFVVNEDKVKRTFKFPVKHGKDLDLDEDDTRKLNLLNTLPLVSPYSDGSKLELWTLEAEKYRVGVVHEFLSLTLEKKASIHHIVEFKEEFSLTKHTYQMLLKQPRTFYLAGTEMNWVVFLKDAYNENGDLIEKDPQVVFNEKLRRYAQMQKME 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29409576 29410763 - Lsi04G022370.1 Lsi04g02237 662286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02237 395 PANTHER OS09G0473400 PROTEIN 1 395 - -
Lsi04g02237 395 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 1 395 IPR045040 GO:0003723
Lsi04g02237 395 Pfam Plant organelle RNA recognition domain 70 393 IPR021099 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02237 - - - csv:101212691 706.057
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02237 Lsi08g00853 CCT
Lsi04g02237 Lsi08g00853 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01371 Lsi-Chr4:21508489 Lsi04g02237 Lsi-Chr4:29409576 1.61E-47 dispersed
Lsi04g02237 Lsi-Chr4:29409576 Lsi08g00552 Lsi-Chr8:13684520 1.30E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g122 . Blo12g01021 Bda01g00632 Bda03g00135 . Bpe02g00500 . Bma01g02204 . Cmo12g00593 . . . . Sed08g1787 Cpe07g00569 . Bhi04g01490 Tan02g1608 Cmetu03g1951 . Hepe08g1409 . Lcy13g2199 . . . . . . . Cone4ag1683 Cone7ag1600 . . Lsi04g02237 . . . . . . . . Bpe04g00118 . . . . . . Cma12g00654 . . . . . . . . . . . Cla08g01002 . . Cco08g1152 Clacu08g1153 . Cre08g0938 Lsi08g00853 . Chy03g00671 .
Vvi18g416 . Blo12g00707 . . . Bpe04g00444 . . . . . Cma09g00559 . . . Cpe06g00425 . . . . . . . . . . . . . . . . . Cone17ag1214 Cone20ag0511 Lsi04g02237 Csa03g04448 Chy04g00252 . . . . Bda01g01362 Bpe02g01574 . Bma01g00900 . Sed13g2135 . Cmo09g00550 . . . Car09g00491 . . Bhi09g02439 Tan01g3791 Cmetu04g2115 . Hepe01g2130 . . Cla11g01384 Cam11g1442 Cec11g1468 Cco11g1464 Clacu11g1599 Cmu11g1418 Cre11g1838 . . . Cme04g00282
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013016 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02237 Lsi_Chr04 FPKM 5.847826 0.0 8.826053 8.196231 8.372048 6.729656 7.800854 5.792742 8.430136 10.762144