Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02239 ATGGCTTACCCACATTACCGATCCCAATTTGGAGATACAACTTTCACTAAAGTTTTTGTTGGTGGCCTTGCCTGGGAAACTCCCACTCACCAAATGAGATCTTATTTTGAACAATTTGGTGACATTCTTGAAGCTGTGATTATCACTGATAAAAACACCTCCAAATCTAAAGGCTATGGATTTGTGACATTTCGCGATGCTGAATCTGCGAGAAGAGCTTGTGCAAATCCAAACCCGATAATCGATGGAAGACGTGCAAATTGTAACATTGCGGCATTGGGTCGACCTCGGCCTTCGCCTCCACGAGGACGAGGTCAGAGTAGTGTAAATCCATATCAAGGAAGTGCAATGCAAGCACAGGCAGTACCATCATATGGTGGAGTCCCGTCGCCGTTAAACCAGCCACCACTTCCTCCGCCACCTCCGCCGCCTCCCCCCGTCATGTATTCACCATACGGATACCCAGCTTACAGTCCTGATTATGGGTACCATCATCACCAAGCAGTATACAACCCACAAATTCAACAGCCACAAATGTATCAACAATCCCCATATTATTATGGGTATTCAGTACAATCGCCAAGAGGAACATTTCCCAGTCCTTCACAATCGCATCATCCTCGGCTAGTACTTTACTATCCTCCTTCACCTACAGCTACAACTCCTCAATTTGAAGCTTCCTTCAATTATCCTCCTCCTTTGATACCACACCGTTTTTCCTCTACAGATTCACAGACATCACAGCAAACTCCTACAGAAGCTGAAGCTGGAGCTGTTACTTCTGATCAAAGTCCAACCACTTGA 804 45.65 MAYPHYRSQFGDTTFTKVFVGGLAWETPTHQMRSYFEQFGDILEAVIITDKNTSKSKGYGFVTFRDAESARRACANPNPIIDGRRANCNIAALGRPRPSPPRGRGQSSVNPYQGSAMQAQAVPSYGGVPSPLNQPPLPPPPPPPPPVMYSPYGYPAYSPDYGYHHHQAVYNPQIQQPQMYQQSPYYYGYSVQSPRGTFPSPSQSHHPRLVLYYPPSPTATTPQFEASFNYPPPLIPHRFSSTDSQTSQQTPTEAEAGAVTSDQSPTT 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29441839 29445728 + Lsi04G022390.1 Lsi04g02239 662288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02239 267 MobiDBLite consensus disorder prediction 238 267 - -
Lsi04g02239 267 SUPERFAMILY RNA-binding domain, RBD 9 114 IPR035979 GO:0003676
Lsi04g02239 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 76 IPR000504 GO:0003723
Lsi04g02239 267 PANTHER BOULE-RELATED 1 253 IPR037366 GO:0003729
Lsi04g02239 267 MobiDBLite consensus disorder prediction 129 144 - -
Lsi04g02239 267 Gene3D - 3 109 IPR012677 -
Lsi04g02239 267 MobiDBLite consensus disorder prediction 91 144 - -
Lsi04g02239 267 CDD RRM_RBM24_RBM38_like 16 91 - -
Lsi04g02239 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lsi04g02239 267 MobiDBLite consensus disorder prediction 225 267 - -
Lsi04g02239 267 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 253 - -
Lsi04g02239 267 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lsi04g02239 267 MobiDBLite consensus disorder prediction 103 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02239 K25006 RBM24_38; RNA-binding protein 24/38 - csv:101207645 390.193
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02239 Lsi08g00971 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02239 Lsi-Chr4:29441839 Lsi04g02024 Lsi-Chr4:27332269 7.66E-08 dispersed
Lsi04g00816 Lsi-Chr4:7762090 Lsi04g02239 Lsi-Chr4:29441839 1.96E-41 transposed
Lsi08g00180 Lsi-Chr8:3829949 Lsi04g02239 Lsi-Chr4:29441839 2.01E-42 transposed
Lsi08g00767 Lsi-Chr8:16065831 Lsi04g02239 Lsi-Chr4:29441839 4.85E-46 transposed
Lsi09g01822 Lsi-Chr9:27024412 Lsi04g02239 Lsi-Chr4:29441839 1.14E-44 transposed
Lsi04g02239 Lsi-Chr4:29441839 Lsi08g00971 Lsi-Chr8:18187218 7.04E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g418 . . . Bda03g00488 Bpe02g00112 Bpe04g00442 . . Cmo05g00529 Cmo12g00125 Cma01g01611 Cma09g00563 Car01g01229 . Sed04g0147 Cpe06g00428 . Bhi04g00769 Tan02g2400 Cmetu03g0823 . Hepe10g0491 . Lcy13g1555 Cla08g01115 Cam08g1571 Cec08g1141 Cco08g1268 Clacu08g1272 . Cre08g1053 Cone4ag1331 Cone7ag1272 . . Lsi04g02239 Csa03g04450 Chy04g00250 . . . Bda11g00769 . . . . . Sed05g1598 Cmo01g01657 Cmo09g00552 Cma12g00162 Cma05g00503 Car05g00452 Car09g00493 Cpe11g00442 Cpe02g00369 Bhi09g02442 Tan01g3793 Cmetu04g1561 . Hepe01g2132 Mch11g0669 . Cla11g01387 Cam11g1444 Cec11g1470 Cco11g1466 Clacu11g1601 Cmu11g1420 Cre11g1840 Lsi08g00971 Csa02g02155 Chy03g01362 Cme04g00280
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005764 2 1 1 0 2 0 3 1 1 1 1 1 2 2 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02239 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 1.659796 1.810995 3.190061 1.333665 1.348031 1.799258