Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02241 ATGGCCTCCTCCATTTTTCTTCCTCTCTTTCTCTCCTTTCTTTCTTTACTTCCTTTCTCTTCACCCACCAGATCAATCCCCAATACCCAAAACCAACAGCTTCTCTTCCAATACCACAATGGCCCTCTTCTCACCGGCCACATATCCCTCAATCTCATCTGGTATGGCAATTTCAAGCCCTCCCAGAAAGCCATTGTTATAGATTTCCTCGCTTCACTTTCTTCTTCCAAACCCATTTCCCCGAATCCCTCTGTTTCCACTTGGTGGAACTCCATTCACAAATATTACACCAAATCCAAACCCCTTTCTCTCTCATTAGCCACCCAAATTCTCGACCCCAATTACTCCCTTGGCAAATCCTTAACCAATCAAAACATTATTGCTCTTGCTTCCAAAGGCGGTCACACAAATGCAATCAACGTCGTCTTAACCGCTGCCGATGTCACAGTCGACCGATTCTGTTTCAACAAATGTGGTTCACATGGATCCTCTCTCGGAGCTCCGATTAAGGGAAAGACCCACAAATTTGCTTACATTTGGGTGGGTAATTCCCAAACCCAATGTCCAGGTTACTGCGCCTGGCCCTTCCACCAACCCTTGTACGGTCCCCAGACTCCGCCTCTGGTCGCTCCCAACAATGACGTTGGGATGGACGGTCTTGTAATTAACCTTGCCGCTCTTCTCGCCGGAACTGCCACCAACCCTTTTGGGAATGGCTTCTATCAGGGCCCTAAGGAGGCTCCGCTTGAGGCGGCGTCGGCCTGCACCGGAATCTTCGCCAAGGGTTCTTATCCTGGCTTTCCTGGGGAGCTTCTCGTCGATTCTGTTAGCGGAGGGAGTTACAATGCGAATGGTCTTAATGGCCGGAAATATCTACTTCCGGCGCTGTTTGATCCGTCCACTTCCGCTTGTTCTACTATCGTTTAA 927 49.19 MASSIFLPLFLSFLSLLPFSSPTRSIPNTQNQQLLFQYHNGPLLTGHISLNLIWYGNFKPSQKAIVIDFLASLSSSKPISPNPSVSTWWNSIHKYYTKSKPLSLSLATQILDPNYSLGKSLTNQNIIALASKGGHTNAINVVLTAADVTVDRFCFNKCGSHGSSLGAPIKGKTHKFAYIWVGNSQTQCPGYCAWPFHQPLYGPQTPPLVAPNNDVGMDGLVINLAALLAGTATNPFGNGFYQGPKEAPLEAASACTGIFAKGSYPGFPGELLVDSVSGGSYNANGLNGRKYLLPALFDPSTSACSTIV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29464183 29465109 - Lsi04G022410.1 Lsi04g02241 662290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02241 308 PANTHER PROTEIN EXORDIUM-LIKE 5 6 308 IPR006766 -
Lsi04g02241 308 PANTHER PHOSPHATE-RESPONSIVE 1 FAMILY PROTEIN 6 308 - -
Lsi04g02241 308 Pfam Phosphate-induced protein 1 conserved region 37 306 IPR006766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02241 - - - csv:101211963 488.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02241 Lsi08g00972 CCT
Lsi04g02241 Lsi08g00972 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02241 Lsi-Chr4:29464183 Lsi04g02243 Lsi-Chr4:29486393 1.48E-146 dispersed
Lsi04g02241 Lsi-Chr4:29464183 Lsi04g02242 Lsi-Chr4:29469725 0 tandem
Lsi03g00954 Lsi-Chr3:18297358 Lsi04g02241 Lsi-Chr4:29464183 5.36E-119 transposed
Lsi04g02241 Lsi-Chr4:29464183 Lsi08g00972 Lsi-Chr8:18196425 1.75E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g424 . . Bda01g00889 . Bpe02g00113 . . . Cmo05g00530 . . . Car01g01230 Car12g00150 Sed04g0148 . Cpe07g00138 Bhi04g00770 Tan02g2401 Cmetu03g2126 . Hepe10g0490 . Lcy13g1554 Cla08g01116 Cam08g1572 Cec08g1142 Cco08g1269 Clacu08g1273 . Cre08g1054 . . . . Lsi04g02241 Csa03g04452 . . . . Bda11g00770 . Bpe02g01125 Bpe14g00457 . . . Cmo01g01658 . . Cma05g00504 Car05g00453 . Cpe11g00443 . Bhi09g02444 Tan01g3796 . . Hepe01g2133 . . . . . . . . . Lsi08g00972 Csa02g02156 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02241 Lsi_Chr04 FPKM 3.452804 3.133155 3.025529 3.469294 3.646688 3.384844 4.641461 0.993327 1.354897 0.94321