Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02245 ATGGCAGAGGGAAGTGATTTCAGGCACTGGGACGAGCTAATACCGGACGCTTTGGGGCTAATCTTCAGTAAACTCTCACTCCAAGAGAAACTCACCGTTATTCCCAGGGTGTGCAAATCATGGGCCAAGGCAGTGCTCGGACCTTACTGCTGGCAAGAGATTGACATTGAAGAATGGAGTAGTCGAAGGCAGCTCGACAATGTTGATCGAATGCTTCAAATGCTGATAAATCGAAGTGGCGGGTCGCTTCGCAAGCTCTGTGTTACTGGTCTTCATAACAGCAGCATTTTCTTCTCCATCGCTGATCATGCTGGTTCTCTTCAAACATTGCGACTGCCAAGGAGCAATATAAGCGATGCTGTAGCAGAACAAATTGCCGGAAGGCTTTGTGCAGTTACTTTTTTGGATCTAAGCTATTGTGATAAAATCAGTGCCTGTGGTTTAGAGTCCATAGGAAAGAATTGCAAAGCTTTAGTTGGAATGTGTCGTAACTTGCATCCGCTACATACAGCAGGTATATCCTCCCCGGACGATGAAGCTTATACTATTGCAGCCACAATGCCGAAACTCAAGCACCTTGAAATGGCTTATCACCCTCTAAGCACCAAAAGTTTACTGACAATACTTTCAAGCTGCCCCAACCTCGAGTTCCTTGATTTGAGAGGGTGTTGGGATGTAAGGCTGGAAGACAAGTTTCTTGCAGAGAAGTTCCCAAAACTGAGGGTGTTGGGGCCTCTCGTTAGGGACGTCTATGAGAGAAACGAATGGGATGAAGGCTCAGACTACTCATACATATCAGATGACTTGGCGTGGGACTTTTCTGCAGATTACTTCGACGATGCTGGTAGTTACGACGATCCATGGGACGACGAATGCAGATTAGAGGGACTAGAGTTGAGATTTTATGAAGGAATAGATGAAGATAATGAAGCCTTTGGTTGGCCTGCCTCTCCTTAA 957 46.08 MAEGSDFRHWDELIPDALGLIFSKLSLQEKLTVIPRVCKSWAKAVLGPYCWQEIDIEEWSSRRQLDNVDRMLQMLINRSGGSLRKLCVTGLHNSSIFFSIADHAGSLQTLRLPRSNISDAVAEQIAGRLCAVTFLDLSYCDKISACGLESIGKNCKALVGMCRNLHPLHTAGISSPDDEAYTIAATMPKLKHLEMAYHPLSTKSLLTILSSCPNLEFLDLRGCWDVRLEDKFLAEKFPKLRVLGPLVRDVYERNEWDEGSDYSYISDDLAWDFSADYFDDAGSYDDPWDDECRLEGLELRFYEGIDEDNEAFGWPASP 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29495950 29497533 + Lsi04G022450.1 Lsi04g02245 662294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02245 318 SUPERFAMILY RNI-like 36 243 - -
Lsi04g02245 318 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 6 318 - -
Lsi04g02245 318 Gene3D Ribonuclease Inhibitor 5 245 IPR032675 -
Lsi04g02245 318 PANTHER F-BOX PROTEIN FBW2 6 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02245 - - - csv:101211071 625.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00921 Lsi-Chr3:17481665 Lsi04g02245 Lsi-Chr4:29495950 5.93E-99 dispersed
Lsi03g01668 Lsi-Chr3:27878511 Lsi04g02245 Lsi-Chr4:29495950 5.41E-14 dispersed
Lsi04g02245 Lsi-Chr4:29495950 Lsi11g00691 Lsi-Chr11:7286792 5.74E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g435 . . . . Bpe02g00115 . . . . . Cma01g01614 Cma09g00566 . . . Cpe06g00430 . . . . . . . . . . . . . . . . . Cone17ag1208 Cone20ag0517 Lsi04g02245 Csa03g04456 Chy04g00246 . . . Bda11g00772 . . Bpe14g00460 . Bma02g00135 . Cmo01g01660 . . . . . . Cpe02g00366 Bhi09g02449 . . . . . . Cla11g01391 Cam11g1447 Cec11g1475 Cco11g1472 Clacu11g1606 Cmu11g1425 Cre11g1845 . . . Cme04g00275
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002091 1 4 1 1 2 1 3 1 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 6 3 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02245 Lsi_Chr04 FPKM 2.174525 2.203396 2.405341 2.561373 4.33288 3.307333 4.231358 6.117584 6.625576 6.320263