Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02246 ATGGCGGTCACCTCTTCCCCTCGCGAGGAGTATGTTTACATGGCCAAGCTTGCCGAGCAAGCTGAGCGCTACGAGGAGATGGTCGAGTTTATGGAGAAGGTCTCCGCCGCTACAGACAACGAGGAGCTTACTGTCGAGGAGCGGAACCTTCTCTCTGTTGCTTACAAAAATGTTATTGGAGCTCGTAGAGCCTCCTGGAGGATCATTTCCTCCATTGAACAGAAGGAGGAGAGCCGAGGGAATGATGATCATGTCTCCATCATCCGAGAATACAGATCCAAAATCGAGACTGAGCTCTCCAACATCTGTGATGGGATCCTTAAGCTTCTTGACTCCCGTCTCATTTCCTCTGCTGCGTCTGGTGACTCCAAGGTGTTTTATCTCAAGATGAAGGGCGATTATCATAGATACCTTGCTGAATTCAAGACCGGAGCTGAGCGGAAGGAAGCTGCCGAAAGTACCCTCACTGCTTATAAATCTGCACAGGATATTGCAAATGCTGAACTTGCTCCTACTCACCCCATACGACTTGGGCTGGCTTTGAACTTTTCAGTGTTCTATTATGAGATTCTGAATTCCCCTGATCGTGCTTGCAGCCTCGCTAAACAGGCTTTCGATGAAGCAATTGCTGAGTTGGATACACTGGGTGAGGAATCATACAAAGATAGCACTTTGATCATGCAACTTCTTCGTGACAACCTCACTCTATGGACTTCGGACATGCAGGATGATGGAGATGAGATTAAAGAAGCAGCTCCCAAACGTGATGACGAATAG 777 48.01 MAVTSSPREEYVYMAKLAEQAERYEEMVEFMEKVSAATDNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSIIREYRSKIETELSNICDGILKLLDSRLISSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGDEIKEAAPKRDDE 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29500335 29503268 + Lsi04G022460.1 Lsi04g02246 662295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02246 258 PANTHER 14-3-3 PROTEIN 4 253 IPR000308 -
Lsi04g02246 258 Gene3D - 1 252 IPR036815 -
Lsi04g02246 258 Pfam 14-3-3 protein 14 238 IPR023410 -
Lsi04g02246 258 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Lsi04g02246 258 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Lsi04g02246 258 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Lsi04g02246 258 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Lsi04g02246 258 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Lsi04g02246 258 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Lsi04g02246 258 PANTHER 14-3-3-LIKE PROTEIN GF14 CHI-RELATED 4 253 - -
Lsi04g02246 258 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Lsi04g02246 258 Coils Coil 14 34 - -
Lsi04g02246 258 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Lsi04g02246 258 PIRSF 14-3-3 2 250 IPR000308 -
Lsi04g02246 258 SMART 1433_4 8 250 IPR023410 -
Lsi04g02246 258 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02246 Lsi08g00980 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02246 Lsi-Chr4:29500335 Lsi07g00987 Lsi-Chr7:13570780 1.24E-160 dispersed
Lsi04g02246 Lsi-Chr4:29500335 Lsi08g00980 Lsi-Chr8:18276685 3.80E-178 wgd
Lsi04g02246 Lsi-Chr4:29500335 Lsi08g01039 Lsi-Chr8:18981438 2.78E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02246 K06630 - csv:101210822 494.582