Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02252 ATGAAGAGATTTGCCCACTCAGAATCCTTGGATTCTTTCATCACCATCTTCTCCCCTAATGATCAACCGAGCTCCAAAACCATAGGCGGCTACAGCAAGGAGTTTCAAGCAATGTTAGACAGTTTGGAGGAAGAAGACAACAGCGAAGACGGCGGCGGTTCAGCACCGGAGAGAAAACGGCGGCTGAAGCTGGATCAAGTGAAGGTCTTGGAGAGGCATTTTGAAGTGGAAAACAAGCTAGAACCAGAGAGAAAAATGAAGATTGCAGCTGAATTAGAGCTTGAACCAAGGCAAGTTACAATTTGGTTTCAAAATCGCAGAGCCCGTTGGAAAACAAAGCAATTAGAAAGAGATTATGGAGTTCTTAAAGTCAATTACGATGCTCTTAAGCTGGATTATGATGTTCTTGAGAAAGAAAATGCTTCTCTTGCTTCAAAGGTCAAAGAATTGAGGGAAAAAGTAAACAGAGAAGGAACAGAGATGAAAATTCAAAGAGAAGTGAAAAATGGGTCAGTGGATAGAGATTCAAACAGAGATGGGAATTCATATATTTCCATGTTGAATTGCTTTGAATTTTCTGGCAAAGTTTATGAGAATCAGACCCATTTTACAAGGGCAATGAATGATGATCAAAGTTTGGTTAATACAGAGGAGCCTTGCAATTTCTGTTCTGTTGATCAAGCTCCCTCTCTCCCCTGGTAA 702 40.88 MKRFAHSESLDSFITIFSPNDQPSSKTIGGYSKEFQAMLDSLEEEDNSEDGGGSAPERKRRLKLDQVKVLERHFEVENKLEPERKMKIAAELELEPRQVTIWFQNRRARWKTKQLERDYGVLKVNYDALKLDYDVLEKENASLASKVKELREKVNREGTEMKIQREVKNGSVDRDSNRDGNSYISMLNCFEFSGKVYENQTHFTRAMNDDQSLVNTEEPCNFCSVDQAPSLPW 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29557379 29559167 - Lsi04G022520.1 Lsi04g02252 662301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02252 233 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Lsi04g02252 233 Gene3D - 50 118 - -
Lsi04g02252 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 198 IPR045224 GO:0003700
Lsi04g02252 233 Pfam Homeodomain 59 111 IPR001356 GO:0003677
Lsi04g02252 233 Coils Coil 126 153 - -
Lsi04g02252 233 SUPERFAMILY Homeodomain-like 47 115 IPR009057 -
Lsi04g02252 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 6 198 - -
Lsi04g02252 233 CDD homeodomain 58 114 IPR001356 GO:0003677
Lsi04g02252 233 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Lsi04g02252 233 MobiDBLite consensus disorder prediction 40 60 - -
Lsi04g02252 233 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Lsi04g02252 233 SMART HOX_1 56 117 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02252 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101209840 334.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01401 Lsi-Chr3:24962142 Lsi04g02252 Lsi-Chr4:29557379 1.40E-39 dispersed
Lsi04g00464 Lsi-Chr4:4399988 Lsi04g02252 Lsi-Chr4:29557379 1.89E-29 dispersed
Lsi04g02252 Lsi-Chr4:29557379 Lsi05g00818 Lsi-Chr5:12772727 1.32E-50 dispersed
Lsi01g00792 Lsi-Chr1:6210199 Lsi04g02252 Lsi-Chr4:29557379 1.65E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014196 0 2 0 0 0 0 1 0 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 3 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25258 PF00046 Homeodomain 1.40E-15 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02252 Lsi_Chr04 FPKM 14.585931 13.177608 12.97271 16.352373 14.315218 19.3613 17.731213 22.882145 27.262955 22.649227