Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02255 ATGCAGCACATTCCAGCAACTCTCGAGGAACAGTTGTTATTGAAAGCAATCAAGGAAGAATGTGCTTGGGAGAGTCTCCCGAAGCGGCTGCAAGCAACATTGTCGTCCAAAGAAGAGTGGCATAGAAGGATTGTTGACCACTGTATAAAGAAGAGACTCCAATGGAACACTAGCTTTGCTCGCAAAGTATGCAAAGAAAGTGAATATTATGAAGATATGATGCGGTATTTGCGAAGGAACCTAGCGCTATTTCCTTATCACCTTGCGGAGTATGTTTGCCGCGTAATGAGAATATCACCTTTTAGATATTACTGCGATATGATATTTGAGGTCATGAAAAATGAGAATCCTTACGATAGCATCCCAAATTTTAGTGCGGCTGATGCGTTGCGGTTGACAGGAATTGGCAGGAATGAATTTATTGATATCATGAATAAGTGTAGATCCAAGAAACTCTCAGAAGAAGAAATGGCAACAATTGACAAAGTTTGTAAGGAGGAGGCTAATTCATTTATTCTCTTCGACCCGGACATTGTAAAAGGTCTCTTCAGAAGGGGACTGATCTACTTTGATGTTCCTGTTTATCCAGATGACCGTTTTAAGGTTTCAAGGCTTGAAGGGTTTGTCTCCAACCGAGAACAGTCCTATGAAGACCCGATTGAGGAGTTATTGTATGCAGTTTTTGTTGTTTCAAGTGAAAATGCAACTGTGGCTGAACTGGCAGCGACATTACAGGCTGACTTATTGCAGCTCCAGGCTGCTGCATCTTTTGCTTGTAGATTGGGATGGGCAGTAAAAGTAATTGATCCAGCATCCGTTCTTCAAGATACTAGCATACCTAACTCTCCTAGGACAATTTTTGCTGATGAAGATGCCTCTCTAGCTGCTTCAGGTTCATCAAACATGTTTTCGGATGGCGATGGTTCTCAACAAGGGTATTCTGGGACAGATGGTTTGGGACCCGATTATGCTCATCGTGTTGCTTTTATTGTAGATGCTAATATAACATCATATCTCATGATGGGGTCAGTTTCACCAGGACTGAAATCCCATGCTGTAACCTTGTATGAAGCTGGAAAACTAGGCCATGCTTGCATCGCAGATCTTTGCAAAGATCTAACTACCTTAGAAGGAGCAAAATTTGAGGGTGAACTGCAGGAATTTGCAAACCATGCATTTAGCCTACGTTGTATTTTGGAATGTTTATTGGTAGGTGGAGTTGCCATTAATGCGAAAGGAGAGGAGGGAACCTGTGATAAACAAGATGCAGAAGCTTCTGACAACAATGAATCTTCATCTTTGATAACAGACACTGCTTCAATTGAAAAGTTAGAATCCTTGACTGTGGATGAAGATCAGAAATATGCTGATGATTCTAGCAGTTCTGAAGTGCTCCTCGAGGGTTCTGCAAACATTGCTGGTGCTGATATGAATTCTGCTACCTCTTTGGATGGTTGGACATCCTTTAGTCAAGCATCCAACCCAGTTCTTGATAACAAATCAATACAGATTGATGAGCTAGATATTGGAGGAGAGTCATTCAAGAGAATAAAGAAATATCAAGTTGATATTCTTCGCTGTGAAAGCTTGGCTTCTCTTGCTCCTTCAACATTAAATCGGTTGTTTCTTCGTGACTATGATGTTGTTGTTTCTATGATTCCTCTTCCTCCTTCATCAGTTCTTCCTGGACCAACAGGTCCTATCCACTTTGGTCCACCATCTTATTCATCTATGACACCTTGGATGAAATTGGTTTTATATTCAACTGTATCCAGTGGGCCACTGTCAGTTATACTTATGAAAGGGCAATGTTTGCGGATGCTTCCTGCACCATTGGCTGGCTGTGAGAAAGCTCTAATATGGTCTTGGGATGGTTCAAATATTGGTGGCCTGGGAGGAAAATTTGAAGGAAATTTTGTAAAAGGGAGTGTACTTTTACATTGTTTAAACGCACTTCTCAAATACTCAGCTGTATTGGTGCAGCCCCTAAGTAAATATGATCTTCATAAAACTGGGAGAGCTATTACCGTCGATGTTCCTTTACCCTTAAAGAATTCTGATGGCTCAATTGCTCAAGTAGGTAATGATCTGGGTCTATCTGAAGAAGAGATTTCCGACTTAAACTCCTTGTTAATTGTTTTAGCGAACAAGATAGAACTGTGGACAGTTGGTTATATTCGGCTGTTGAAACTCTACAAAGAAAGGGAGTTGGAAAACTTTTCTTCGGATGAAAAGACCTACGAATGGGTACCATTGAGTGTAGAATTTGGGATACCACTTTTTAGTCCCAAGTTATGTGATAATATTTGTAAAAGGGTGGTCTCATCTGAATTACTTCAATCAGAATTACTGCACAAGCATCATGAAGCCATGCAAGGATTGAGAAAGAGATTACGTGATGTTTGTGCGGAATACCAAGCAACAGGTCCAGCCGCTAGACTTTTATATCAGAAGGAACAACCTAAAGAACTTTCCAGACAACTTATGAACTATGCTAGTGGAAGGTGGAATCCGCTAGTGGATCCTTCATCTCCTATTTCAGGAGCTGGGAATGAACATCAGAGACTTAAGCTTGCTAATCGGCATCGCTGTCGTACTGAAGTTTTGAGTTTTGATGGTACCATTCTTAGATCCTATGCTCTAGCTCCCGTGTACGAGGCTGCCACAAGGCCAATTGAAGAAGCCCTTCCTGCTAATTCAGCAAAAGGCGAATCAGATGAAGCTGACAGCAAGGAAGTAGTACTCCCCGGTGTGAATATGATTTTTGATGGTACCGAGTTACATCCTTTCGATATAGGTGCTTGCCTGCAGGCTCGTCAACCGATTGCCTTAGTAGCAGAAGCAGCTGCAGCCTCAGCAGCAGCCGCAACTAAATAG 2877 41.71 MQHIPATLEEQLLLKAIKEECAWESLPKRLQATLSSKEEWHRRIVDHCIKKRLQWNTSFARKVCKESEYYEDMMRYLRRNLALFPYHLAEYVCRVMRISPFRYYCDMIFEVMKNENPYDSIPNFSAADALRLTGIGRNEFIDIMNKCRSKKLSEEEMATIDKVCKEEANSFILFDPDIVKGLFRRGLIYFDVPVYPDDRFKVSRLEGFVSNREQSYEDPIEELLYAVFVVSSENATVAELAATLQADLLQLQAAASFACRLGWAVKVIDPASVLQDTSIPNSPRTIFADEDASLAASGSSNMFSDGDGSQQGYSGTDGLGPDYAHRVAFIVDANITSYLMMGSVSPGLKSHAVTLYEAGKLGHACIADLCKDLTTLEGAKFEGELQEFANHAFSLRCILECLLVGGVAINAKGEEGTCDKQDAEASDNNESSSLITDTASIEKLESLTVDEDQKYADDSSSSEVLLEGSANIAGADMNSATSLDGWTSFSQASNPVLDNKSIQIDELDIGGESFKRIKKYQVDILRCESLASLAPSTLNRLFLRDYDVVVSMIPLPPSSVLPGPTGPIHFGPPSYSSMTPWMKLVLYSTVSSGPLSVILMKGQCLRMLPAPLAGCEKALIWSWDGSNIGGLGGKFEGNFVKGSVLLHCLNALLKYSAVLVQPLSKYDLHKTGRAITVDVPLPLKNSDGSIAQVGNDLGLSEEEISDLNSLLIVLANKIELWTVGYIRLLKLYKERELENFSSDEKTYEWVPLSVEFGIPLFSPKLCDNICKRVVSSELLQSELLHKHHEAMQGLRKRLRDVCAEYQATGPAARLLYQKEQPKELSRQLMNYASGRWNPLVDPSSPISGAGNEHQRLKLANRHRCRTEVLSFDGTILRSYALAPVYEAATRPIEEALPANSAKGESDEADSKEVVLPGVNMIFDGTELHPFDIGACLQARQPIALVAEAAAASAAAATK 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29572783 29583937 + Lsi04G022550.1 Lsi04g02255 662304

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02255 958 Pfam FAM91 N-terminus 17 151 IPR028091 -
Lsi04g02255 958 Pfam FAM91 N-terminus 150 266 IPR028091 -
Lsi04g02255 958 PANTHER FAM91A1-LIKE PROTEIN 150 956 - -
Lsi04g02255 958 PANTHER FAM91A1-LIKE PROTEIN 1 152 - -
Lsi04g02255 958 Pfam FAM91 C-terminus 517 821 IPR028097 -
Lsi04g02255 958 Pfam FAM91 C-terminus 325 402 IPR028097 -
Lsi04g02255 958 PANTHER PROTEIN FAM91A1 150 956 IPR039199 -
Lsi04g02255 958 PANTHER PROTEIN FAM91A1 1 152 IPR039199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02255 - - - csv:101209594 1701.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g451 . Blo12g00714 . Bda03g00480 . Bpe04g00434 Bma04g00447 . . . Cma01g01626 Cma09g00575 . . . Cpe06g00438 . . . . . . . . . . . . . . . Cone4ag1320 Cone7ag1264 . . Lsi04g02255 Csa03g04466 Chy04g00235 . . . . . . . . . Sed05g1581 Cmo01g01673 Cmo09g00561 . . . Car09g00504 . Cpe02g00357 Bhi09g02466 Tan01g3815 Cmetu04g2924 . Hepe01g2147 Mch11g0685 . . . . . . . . . . . Cme04g00262
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005439 1 2 1 1 1 0 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02255 Lsi_Chr04 FPKM 1.768083 1.704949 6.039728 6.972836 20.817476 16.960119 18.378588 4.768429 5.235184 5.042428