Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02258 ATGAGTCCGAATTTTGCTACGGTTTATACCGTCGGAGACACTGCCGGTTGGTCTCTCGGTGTTGATTATGGCACGTGGGCTTCTGGGAAGACCTTCGGCGTCGGCGACAAACTTGCGTTCAACTATGCAGGAAGCCACACAGTAGACGAAGTTACCGCCAGTGACTACAAAGCATGCGCGGCCGGAAACTCCATAACTTCTGACAGTTCAGGCTCCACCACCATCACCTTAAAAACCCCCGGAACTCACTACTTCATTTGCAGTTCCATGGGTCATTGCGATGGCGGCATGAAACTCTCCGTCACAGTTGCTGCCGGTGGACCGTCCACTACTCCATCTTCAGGGGGCGGCAGCTCCACCACTCCAATGTCGCCGGCAAGTGACACCCCTTCGGCTACCGGAACAACGCCGGCGACGACCACGCCGACAACGAAGCTTCCAGCCGGTTCGTCGAATTCAGGGTCGTCTCTTTTCCCCAATTTCTACATGGCCGTTTTGGCGATTTTGGTAGGTTCATTGGCGTTGGCTGTGGGTTATTTTTGA 543 54.51 MSPNFATVYTVGDTAGWSLGVDYGTWASGKTFGVGDKLAFNYAGSHTVDEVTASDYKACAAGNSITSDSSGSTTITLKTPGTHYFICSSMGHCDGGMKLSVTVAAGGPSTTPSSGGGSSTTPMSPASDTPSATGTTPATTTPTTKLPAGSSNSGSSLFPNFYMAVLAILVGSLALAVGYF 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29623238 29629151 - Lsi04G022580.1 Lsi04g02258 662307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02258 180 ProSiteProfiles Phytocyanin domain profile. 7 105 IPR003245 GO:0009055
Lsi04g02258 180 MobiDBLite consensus disorder prediction 104 151 - -
Lsi04g02258 180 PANTHER BLUE COPPER PROTEIN-LIKE 3 170 - -
Lsi04g02258 180 Pfam Plastocyanin-like domain 17 97 IPR003245 GO:0009055
Lsi04g02258 180 CDD Phytocyanin 7 103 - -
Lsi04g02258 180 SUPERFAMILY Cupredoxins 5 103 IPR008972 -
Lsi04g02258 180 Gene3D - 5 107 IPR008972 -
Lsi04g02258 180 PANTHER BLUE COPPER PROTEIN 3 170 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02258 - - - csv:101208685 258.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g02258 Lsi08g00986 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02258 Lsi-Chr4:29623238 Lsi10g00159 Lsi-Chr10:2565306 7.91E-30 dispersed
Lsi02g00032 Lsi-Chr2:359526 Lsi04g02258 Lsi-Chr4:29623238 3.33E-20 transposed
Lsi02g01107 Lsi-Chr2:12686852 Lsi04g02258 Lsi-Chr4:29623238 5.51E-18 transposed
Lsi03g00390 Lsi-Chr3:4531986 Lsi04g02258 Lsi-Chr4:29623238 2.05E-15 transposed
Lsi05g02222 Lsi-Chr5:28749498 Lsi04g02258 Lsi-Chr4:29623238 4.06E-22 transposed
Lsi08g00249 Lsi-Chr8:5609328 Lsi04g02258 Lsi-Chr4:29623238 7.01E-11 transposed
Lsi09g00492 Lsi-Chr9:5144067 Lsi04g02258 Lsi-Chr4:29623238 2.33E-26 transposed
Lsi04g02258 Lsi-Chr4:29623238 Lsi08g00986 Lsi-Chr8:18327551 5.35E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g453 . Blo12g00715 . Bda03g00478 Bpe02g00124 Bpe04g00433 Bma04g00446 Bma01g02602 Cmo05g00540 . Cma01g01628 Cma09g00579 . . . Cpe06g00440 . Bhi04g00926 . . . Hepe10g0421 . Lcy13g1473 Cla08g01130 Cam08g1587 Cec08g1157 Cco08g1283 Clacu08g1287 . Cre08g1069 . . Cone17ag1202 Cone20ag0526 Lsi04g02258 Csa03g04469 Chy04g00232 Cme03g01843 . . Bda11g00779 Bda13g01385 Bpe02g01525 Bpe14g00466 Bma01g00937 . Sed05g1577 Cmo01g01674 Cmo09g00563 . Cma05g00513 Car05g00463 Car09g00507 . Cpe02g00356 Bhi09g02470 Tan01g3819 Cmetu04g3088 . Hepe01g2150 . . Cla11g01403 Cam11g1460 Cec11g1487 Cco11g1484 Clacu11g1621 Cmu11g1438 Cre11g1857 Lsi08g00986 Csa02g02171 Chy03g01346 Cme04g00259
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002164 3 2 2 2 3 1 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 1 3 3 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02258 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 3.352481 2.190436 2.048936 0.079167 0.0 0.0