Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02259 ATGGCTCTGGTTCGTCTTCCTTGTTCTTCGTCTTCCTCATTCCTCCGCTCTAAACAACACCACCTGATTTTTCTGGCGCCTCTCTCATGTCCGCAAAACCCAACTTATCCCATCAATGGCGACTTCAATCTCTCTATTTCTCGCTCTTCTCCCTCTCTTCGTTCAACTTCCATCAGCCACAATCCTTTAATTTCAATTAGAGCTAAGAGAACCAGCAAGTTTGTTTTCCAGTTCGCATCAACCTCCCAAGACGAAGCAGTTGCGAGCTCGCCTTCTGATACTGAAGAATTTTCTCGAACTAGATTGCTTGCTCAAAATGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATTTGGTACTGTCCTGGACGTGGAGCTTTCTATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAGGCCCTTGCTGCGCTTAGCAATCTCGAATCGTATGAATTTGAGGGTCGGACTCTGAGGCTCAATTATGCCAAGCTTAAAAAAGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACTTTTAATTTGTTCGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGGGAGTTTTTTGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCTAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAGGGATGCTGAAACAGCTATTTCCGAGTTCCAAGGGAAGGTAATTTCAATTTTCATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCCTCAGAAGAGAATTCCCAATCTGAAGATACATCAACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAA 915 44.15 MALVRLPCSSSSSFLRSKQHHLIFLAPLSCPQNPTYPINGDFNLSISRSSPSLRSTSISHNPLISIRAKRTSKFVFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKFGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALSNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKRDAETAISEFQGKVISIFMGRSLRVARSKQFVKLPSEENSQSEDTSTDGVELANAAAEV 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29629395 29631169 - Lsi04G022590.1 Lsi04g02259 662308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02259 304 Gene3D - 65 181 IPR012677 -
Lsi04g02259 304 Gene3D - 182 296 IPR012677 -
Lsi04g02259 304 SMART rrm1_1 194 271 IPR000504 GO:0003723
Lsi04g02259 304 SMART rrm1_1 101 173 IPR000504 GO:0003723
Lsi04g02259 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Lsi04g02259 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 275 IPR000504 GO:0003723
Lsi04g02259 304 PANTHER OS08G0483200 PROTEIN 1 294 - -
Lsi04g02259 304 MobiDBLite consensus disorder prediction 279 294 - -
Lsi04g02259 304 SUPERFAMILY RNA-binding domain, RBD 88 183 IPR035979 GO:0003676
Lsi04g02259 304 SUPERFAMILY RNA-binding domain, RBD 182 279 IPR035979 GO:0003676
Lsi04g02259 304 MobiDBLite consensus disorder prediction 279 304 - -
Lsi04g02259 304 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 294 - -
Lsi04g02259 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 171 IPR000504 GO:0003723
Lsi04g02259 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 260 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02259 - - - csv:101208444 509.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02259 Lsi-Chr4:29629395 Lsi07g01183 Lsi-Chr7:17339455 2.20E-30 dispersed
Lsi04g02259 Lsi-Chr4:29629395 Lsi02g02602 Lsi-Chr2:32407727 2.27E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g454 . Blo12g00716 . . Bpe02g00125 . . Bma01g02601 . . . . . . . Cpe06g00441 . . . . . . . . . . . . . . . . Cone7ag1262 . . Lsi04g02259 Csa03g04470 Chy04g00231 . . . Bda11g00780 . . . . . Sed13g2155 . . . . . Car09g00508 . Cpe02g00355 Bhi09g02471 Tan01g3820 Cmetu04g0043 . Hepe01g2151 Mch11g0689 . Cla11g01404 Cam11g1461 Cec11g1489 Cco11g1485 Clacu11g1622 Cmu11g1439 Cre11g1858 . . . Cme04g00257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02259 Lsi_Chr04 FPKM 0.0 0.0 0.027888 0.0 0.136915 0.201731 0.21115 0.021599 0.018305 0.0