Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02266 ATGCAGAATCCGGAGGCCATTTCGTATCTGACGCAGCGGGAAGCAGCTGAGGTCGATGAGATTCTCATGGGCCCTATCGGATTCAGCGTCGACCAATTGATGGAGCTGGCTGGATTGAGCGTGGCCACTTCCATAGCAGAGGTTTACAAAGCCAGTGAGTATAAGCGTGTTCTTGTTATCTGTGGTCCTGGAAACAATGGTGGAGATGGTCTTGTGGCTGCTCGCCATCTGTTTCACTTTGGATACAAGCCATCTATATGTTATCCAAAGAAGACTCCGAAATCTCTTTATGCTGGTTTGGTTACTCAGCTGGAATCACTGTCAGTTCCTTTCTTGACAGTGGAGGACTTGCCTTTGGATTTGTCAAAGGATTTTGACATTATAATCGACGCAATTTTTGGGTTCTCCTTCCATGGTGCTCCAAGGCCACCATTCAATGATTTGATCCAAAGGCTTATATCTTTAAATGAGTACAAGGAAGCAAATCAAAGAAGTCCTGTTATTGTTTCTGTAGATATTCCATCTGGATGGCATGTTGAAGAAGGGGATATTAGTGATAGCAGCTTTAAACCTGATATGTTGGTTTCTCTGACTGCCCCAAAGCTGTGTGCAAAGAAATTTGATGGTCCACATCATTTTTTAGGCGGCAGATTTGTGCCACCATCTATTGTAAACAAATATAACCTCCATCTTCCTCCTTATCCTGGCACTGCGATGTGTGTTCGAATAGGAAAGCCTCCACAAGTTGATATTGCTGCACTTCGAGAAAACTATATTTCTCCAGAATTTGTCGAAGAAAATCTAGAGGCTGATCCTATTCGTCAGTTCCGCAAATGGTTTGACGATGCAGTTGTTGCTAATTTAAGGGAACCTAATGCAATGTCTTTGTCCACAGCTACAAGTGATGGAAAACCATCATCTCGCATGGTTTTGCTAAAAGGAGTTGACGAAGATGGTTTTGTCTGGTCAGTATATGCTAGATTATTACCTGTTGAAGCAAGTAATATTTTCCCTGCACCTGAAAATAACTCGTCTCTTATTGTTGCATCTTCTTCTGCAGTGGTCCTCCCAAACTCTGATTCTGCTTTCATTCTGGATATAGGAAACAGTAAAACTAAGGAAATAAGAGTGGAAGGATCTGTGCAGAAAGTTTCTGAAGAGGAATCTGAGCAGTATTTCCACAGCCGTCCTCGAGGAAGTCAGCTTGGTGCAATAGTTAGCCCACAGAGTTCTGTAGTTCCCGGAAGACATTTTCTCATTGATAAGTACAAGGAACTAGAGGATAGATTCTCGAATGGAAGTTTGATTCCAAAACCAAAACACTGGGGAGGATACAGGCTTAAACCTGAACTTTTTGAGTTTTGGCAAGGGCAGCCATCTCGGTTGCATGACAGGTTGCAATATTCCCCTTGCGAGATAGATGGGAAAAAAGCTTGGAAAGTAGAACGGTTGGCTCCCTGA 1461 42.98 MQNPEAISYLTQREAAEVDEILMGPIGFSVDQLMELAGLSVATSIAEVYKASEYKRVLVICGPGNNGGDGLVAARHLFHFGYKPSICYPKKTPKSLYAGLVTQLESLSVPFLTVEDLPLDLSKDFDIIIDAIFGFSFHGAPRPPFNDLIQRLISLNEYKEANQRSPVIVSVDIPSGWHVEEGDISDSSFKPDMLVSLTAPKLCAKKFDGPHHFLGGRFVPPSIVNKYNLHLPPYPGTAMCVRIGKPPQVDIAALRENYISPEFVEENLEADPIRQFRKWFDDAVVANLREPNAMSLSTATSDGKPSSRMVLLKGVDEDGFVWSVYARLLPVEASNIFPAPENNSSLIVASSSAVVLPNSDSAFILDIGNSKTKEIRVEGSVQKVSEEESEQYFHSRPRGSQLGAIVSPQSSVVPGRHFLIDKYKELEDRFSNGSLIPKPKHWGGYRLKPELFEFWQGQPSRLHDRLQYSPCEIDGKKAWKVERLAP 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29668503 29678651 + Lsi04G022660.1 Lsi04g02266 662315

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02266 486 Gene3D - 263 486 IPR012349 -
Lsi04g02266 486 Pfam Pyridoxamine 5'-phosphate oxidase 280 324 IPR011576 -
Lsi04g02266 486 PANTHER NAD(P)H-HYDRATE EPIMERASE 1 471 IPR032976 -
Lsi04g02266 486 PANTHER NAD(P)H-HYDRATE EPIMERASE 1 471 - -
Lsi04g02266 486 Gene3D - 6 248 IPR036652 -
Lsi04g02266 486 ProSiteProfiles YjeF N-terminal domain profile. 15 251 IPR004443 -
Lsi04g02266 486 SUPERFAMILY YjeF N-terminal domain-like 8 238 IPR036652 -
Lsi04g02266 486 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 13 208 IPR004443 -
Lsi04g02266 486 Hamap NAD(P)H-hydrate epimerase [nnrE]. 11 246 IPR004443 -
Lsi04g02266 486 Pfam YjeF-related protein N-terminus 31 203 IPR004443 -
Lsi04g02266 486 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 442 486 IPR019576 -
Lsi04g02266 486 SUPERFAMILY FMN-binding split barrel 258 486 - -
Lsi04g02266 486 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 452 465 IPR019740 GO:0016638
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02266 K23998 PPOX; pyridoxal 5'-phosphate synthase / NAD(P)H-hydrate epimerase [EC:1.4.3.5 5.1.99.6] - csv:101207469 814.683
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g476 . . . . Bpe02g00130 Bpe04g00429 . Bma01g02596 . . Cma01g01633 . . . . . . . . . . . . . . . . . . . . Cone4ag1312 Cone7ag1255 . . Lsi04g02266 Csa03g04475 Chy04g00226 . . . Bda11g00785 . . . . . Sed05g1572 Cmo01g01678 . . . . . . . Bhi09g02478 Tan01g3831 . . Hepe01g2157 Mch11g0694 . Cla11g01409 Cam11g1466 Cec11g1494 Cco11g1490 Clacu11g1627 Cmu11g1444 Cre11g1863 . . . Cme04g00252
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004922 1 3 2 2 2 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02266 Lsi_Chr04 FPKM 0.0 0.0 11.535468 11.716458 5.076163 1.636605 2.996485 2.073176 1.231066 2.187947