Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02270 ATGGCGTCCGCCATTCCTGAAAACCTAACCAGGGAACAGTATGTTTACCTGTCGAAGCTTTCCGAGCAAGCCGAGCGCTACGAGGAAATGGTCCAGTTCATGCAGAAGCTTGTACTGAGCTCCATTCCAGCCTCGGAGCTCACTGTCGAGGAGCGCAATCTCCTTTCCGTCGCATACAAAAACGTGATCGGTTCTCTCCGAGCAGCTTGGCGTATCGTATCCTCAATTGAACAGAAGGAAGAAGGAAGGAAGAACGAAGATCATGTCGTCCTCGTCAAGGATTACAGATCTAAGGTCGAATCCGAGCTCACTGAGGCATGCGCCAGTATTTTGAAGCTGTTGGACTCCAATCTGATACCCTCCTCATCCTCTGGTGAATCTAAGGTGTTCTACTTAAAGATGAAGGGAGATTACCATAGGTACTTGGCTGAGTTTAAGATCGGGGAGGAAAGGAAGTCCGCCGCCGAGGACACCATGATAGCTTACAAGGCTGCTCAGCACCCCTCTGATAAATTCTATGTTATGGAGAATATTGCAGTTGCCGATCTTGCACCAACGCATCCAATCAGGCTGGGCCTAGCACTAAATTTTTCTGTTTTTTACTTTGAGATCCTGAACCAGTCTGATAAAGCCTGTAGCATGGCCAAACAGGCATTTGAAGAAGCCATTGCGGAATTGGACACGTTAGGTGAAGAATCATACAAGGATAGCACTCTAATCATGCAACTCTTAAGAGACAATCTCACCCTTTGGACTTCCGATACACAGATTATCGGTCGGAGTTTGATACCCGCTAGGGTTTCTCTGAGTTCTCTCTCGTCTCATGGAGGACTTCGCCTTTCACGATGGCAACGTCTGCGGTTTGCTCGAGAGCAGGCACATCAACTTTCGTCAAGATCCCACCTATGGTTTGCAGATGCACTCGTCATTCATCCAAAGACTCTCCCAGGAAAAGGAACTGGAGTGGCCTGGAATTCTCGTGGTTCGCTTTTGATATCTGGATCAGATGACACTCGGATAAACATCTGGAGCTATTCTGGTCGAAAGTTATTGCACTCTTTGGATACTGGGCATTCTACAAACATATTTTGTACGAAATTTGTTCCTGAAACGTCTGATGAGCTTGTGGTCTCGGGAGCTGGGGATGCAGAGGTGCGGTTGTTTAATTTATCTCGCTTAAGAGGGAGAGGACAAGATGATAATCCCATAGCTTCATCGGCTTTGTATCAGTGTCACACCAGAAGAGTAAAAAAATTAGCTGTTGAAATAGGGAATCCAAATGTAGTATGGAGTGCTAGTGAGGATGGGACTCTTAGACAGCATGATTTTCGAGAGGGCATGTCTTGTCCTCCTGACGGAGCTTCTCACCAAGAATGCCACAATGTTCTTCTTGATTTGCGGTGTGGAGCAAAGAGGTCATTGGCTGATCCTCCCAGACAAACCCTTGCTTTGAAATCCTGTGACATTAGTTCCACTAGGCCTCATTTACTTCTGGTTGGTGGAAGTGATGCATTTGCACGGTTATATGATAGAAGGATGCTGCCACCCTTGTCTTCCAGCCAGAAGAGGATGTCACCACCTCCTTGTGTTAACTACTTCTGTCCAATGCATCTCTCTGATCGGGTTCGATCGGGTCTGCATTTGACTCATGTTACTTTTAGTCCGAATGGAGAAGAGATCCTGCTAAGCTATAGTGGAGAACATGTATACTTGATGAATGTAAATCATGCTGGTCGAAGTACAATGCAGTATACATCAGGAGATGTCTCTAAGTTAATGAGCTTCACTCCTGTACTCAACGGATTGGAATTACAGCATCCTGTTTCCAGTCTATCCAATGGTTTGCCTTTAATTTGTGGTGTTAATGCAAAGCGGAAGTGGAAGAATGATGTTCATATGGCCATAAGGGATTGTTACAGTGCTAGGAAAATGAATCATTCCTCTTTCAGTGCACATTACTACATGTGCGAAGCTCTATCACAGCTGGGTAAACATAAGGAAGCCCTAGATTTTGCATTTGCTGCTCAGTGTTTAGCTCCATCTAATCCTGAAGTGGCAGAGAAGGTGGAAAGTGTAAAGAGGGACCTTGCAGCAGCTGAATTGGAAAAATCAAATAAAGGCAATGATGGAGCTCTAAGATCAGCACCGTTAGGTGGTGTATTATCATTAAGTGACTTTCTTTACCGCTCAGATGCAAATAGTGATGTTTCACAAGATGGGCTGAGATCAGAAAGAGAAGATTCTGATTACGATGAGGAGGTGGAGCTGGACTTTGAAACTTTATCAGGCGATGAAGCCCATGATGTTGATTCCAACGTTCTACATGGAAGTTTAAATCTTAGAATACATAGACGAGTTGATCCAGCAAGAGAAAGGATTGGCCCAAATGGCTCCTGTGGGTCTCCTTCATCATCACAAAATGATTCAACACTTTATCAGCCTGAACCCGTCGTTGATATGAAGCAAAGATATATTGGTCATTGTAACATCGGAACTGATATTAAACAAGCCAGTTTTCTTGGGCAAAGAGGTGAATATGTTGCCAGTGGTAGTGATGATGGTAGATGGTTTATTTGGGAAAAGGGAACTGGTAGACTGATTAAAATACTTGTTGGAGATGGAGCTGTAGTGAATTGCGTGCAAAGTCATCCATTTGATTGTGCCATTGCTACTAGCGGGATCGACAATACCATAAAGCTATGGACTCCAACTGCTCCAGTCCCGTCACTTGTAGCTGGTGGAGCGGTTGGACCGCAGGCAGCCGACGTGTTGGCTGCAATAGAGAACAATCAGCGCAGACTCTGCCGTAATAGAGAAGCCATACTGCCTTTTGAAATTTTAGAGCGGTTTAGAATGCATGATTTCTCAGAAGGAAGCCTTCATCCATTTGAATGTGCCCAGAGTTGA 2907 44.96 MASAIPENLTREQYVYLSKLSEQAERYEEMVQFMQKLVLSSIPASELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVESELTEACASILKLLDSNLIPSSSSGESKVFYLKMKGDYHRYLAEFKIGEERKSAAEDTMIAYKAAQHPSDKFYVMENIAVADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDTQIIGRSLIPARVSLSSLSSHGGLRLSRWQRLRFAREQAHQLSSRSHLWFADALVIHPKTLPGKGTGVAWNSRGSLLISGSDDTRINIWSYSGRKLLHSLDTGHSTNIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLRGRGQDDNPIASSALYQCHTRRVKKLAVEIGNPNVVWSASEDGTLRQHDFREGMSCPPDGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSSQKRMSPPPCVNYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSGEHVYLMNVNHAGRSTMQYTSGDVSKLMSFTPVLNGLELQHPVSSLSNGLPLICGVNAKRKWKNDVHMAIRDCYSARKMNHSSFSAHYYMCEALSQLGKHKEALDFAFAAQCLAPSNPEVAEKVESVKRDLAAAELEKSNKGNDGALRSAPLGGVLSLSDFLYRSDANSDVSQDGLRSEREDSDYDEEVELDFETLSGDEAHDVDSNVLHGSLNLRIHRRVDPARERIGPNGSCGSPSSSQNDSTLYQPEPVVDMKQRYIGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKGTGRLIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTAPVPSLVAGGAVGPQAADVLAAIENNQRRLCRNREAILPFEILERFRMHDFSEGSLHPFECAQS 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29715150 29737463 - Lsi04G022700.1 Lsi04g02270 662319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02270 968 Coils Coil 17 37 - -
Lsi04g02270 968 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 322 968 - -
Lsi04g02270 968 MobiDBLite consensus disorder prediction 733 752 - -
Lsi04g02270 968 ProSitePatterns 14-3-3 proteins signature 2. 234 253 IPR023409 -
Lsi04g02270 968 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 322 968 IPR045151 -
Lsi04g02270 968 MobiDBLite consensus disorder prediction 797 811 - -
Lsi04g02270 968 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
Lsi04g02270 968 Pfam 14-3-3 protein 19 252 IPR023410 -
Lsi04g02270 968 ProSiteProfiles Trp-Asp (WD) repeats profile. 870 901 IPR001680 GO:0005515
Lsi04g02270 968 SUPERFAMILY 14-3-3 protein 10 254 IPR036815 -
Lsi04g02270 968 SMART WD40_4 347 389 IPR001680 GO:0005515
Lsi04g02270 968 SMART WD40_4 308 344 IPR001680 GO:0005515
Lsi04g02270 968 SMART WD40_4 470 510 IPR001680 GO:0005515
Lsi04g02270 968 SMART WD40_4 863 902 IPR001680 GO:0005515
Lsi04g02270 968 SMART WD40_4 817 860 IPR001680 GO:0005515
Lsi04g02270 968 SMART WD40_4 402 442 IPR001680 GO:0005515
Lsi04g02270 968 SUPERFAMILY WD40 repeat-like 319 901 IPR036322 GO:0005515
Lsi04g02270 968 MobiDBLite consensus disorder prediction 786 811 - -
Lsi04g02270 968 Gene3D - 819 947 IPR015943 GO:0005515
Lsi04g02270 968 Gene3D - 2 260 IPR036815 -
Lsi04g02270 968 Gene3D - 311 610 IPR015943 GO:0005515
Lsi04g02270 968 Gene3D Tetratricopeptide repeat domain 611 712 IPR011990 GO:0005515
Lsi04g02270 968 SMART 1433_4 11 265 IPR023410 -
Lsi04g02270 968 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 353 IPR001680 GO:0005515
Lsi04g02270 968 SUPERFAMILY TPR-like 629 687 IPR011990 GO:0005515
Lsi04g02270 968 Pfam WD domain, G-beta repeat 320 344 IPR001680 GO:0005515
Lsi04g02270 968 Pfam WD domain, G-beta repeat 865 901 IPR001680 GO:0005515
Lsi04g02270 968 PRINTS 14-3-3 protein zeta signature 198 224 IPR000308 -
Lsi04g02270 968 PRINTS 14-3-3 protein zeta signature 171 197 IPR000308 -
Lsi04g02270 968 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Lsi04g02270 968 PRINTS 14-3-3 protein zeta signature 225 254 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02270 Lsi-Chr4:29715150 Lsi07g00987 Lsi-Chr7:13570780 7.86E-122 dispersed
Lsi11g01221 Lsi-Chr11:20800263 Lsi04g02270 Lsi-Chr4:29715150 3.00E-20 dispersed
Lsi04g02270 Lsi-Chr4:29715150 Lsi08g01039 Lsi-Chr8:18981438 2.25E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02270 K11807 - tcc:18591778 1004.59