Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02272 ATGTCGGGCGCCTGGGAAGACAGTGTTACGGACTCCGATCGACAATCCGACCCCGATCATCAACATTCCCACATCAATTTCGATTTCTTGTCCGCCATTGTTAAACCCAAGGATTACTACAAAATCTTGGAGGTCGATTACGATGCTACGGACGATGACATTCGATCCAATTACATACGACTGGCTTTGAAATGGCATCCTGACAAGCAGAAAGATAAAGATGGTGCCACTTCCAGATTTCAGGAAATAAACGAGGCATATCAAGTTTTAAGCGATCCTTCCAGAAGGCAGGAATACGACGAGAAAGGGATGCTTTATGTAAATGATGATAACATAGTGGATTACCTCAAACGATACAAAAGCCTTATTTTGACTTGTAATGGCCTTGGTATGAAGTATTCAATTTGGTGA 411 42.34 MSGAWEDSVTDSDRQSDPDHQHSHINFDFLSAIVKPKDYYKILEVDYDATDDDIRSNYIRLALKWHPDKQKDKDGATSRFQEINEAYQVLSDPSRRQEYDEKGMLYVNDDNIVDYLKRYKSLILTCNGLGMKYSIW 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29741498 29744610 - Lsi04G022720.1 Lsi04g02272 662321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02272 136 Pfam DnaJ domain 38 100 IPR001623 -
Lsi04g02272 136 SMART dnaj_3 37 95 IPR001623 -
Lsi04g02272 136 CDD DnaJ 38 92 IPR001623 -
Lsi04g02272 136 SUPERFAMILY Chaperone J-domain 33 120 IPR036869 -
Lsi04g02272 136 Gene3D DnaJ domain 30 120 IPR036869 -
Lsi04g02272 136 ProSitePatterns Nt-dnaJ domain signature. 80 99 IPR018253 -
Lsi04g02272 136 MobiDBLite consensus disorder prediction 1 21 - -
Lsi04g02272 136 PRINTS DnaJ domain signature 95 114 IPR001623 -
Lsi04g02272 136 PRINTS DnaJ domain signature 58 73 IPR001623 -
Lsi04g02272 136 PRINTS DnaJ domain signature 40 58 IPR001623 -
Lsi04g02272 136 PRINTS DnaJ domain signature 75 95 IPR001623 -
Lsi04g02272 136 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 136 - -
Lsi04g02272 136 ProSiteProfiles dnaJ domain profile. 38 103 IPR001623 -
Lsi04g02272 136 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02272 - - - csv:101206591 260.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02272 Lsi-Chr4:29741498 Lsi01g00291 Lsi-Chr1:2580457 1.14E-18 dispersed
Lsi04g02443 Lsi-Chr4:31505423 Lsi04g02272 Lsi-Chr4:29741498 2.00E-07 transposed
Lsi10g00394 Lsi-Chr10:6009478 Lsi04g02272 Lsi-Chr4:29741498 3.42E-14 transposed
Lsi04g02272 Lsi-Chr4:29741498 Lsi08g01038 Lsi-Chr8:18975182 6.16E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g487 . . . . . . . . . Cmo12g00144 Cma01g01638 . . Car12g00169 . . Cpe07g00157 . . . . . . . . . . . . . . . . . . Lsi04g02272 Csa03g04483 Chy04g00217 . . . . . . . . Bma02g00106 Sed13g1547 Cmo01g01685 . Cma12g00186 . . . . . Bhi09g02487 Tan01g3840 Cmetu04g2532 . Hepe01g2162 Mch11g0701 . Cla11g01415 Cam11g1472 Cec11g1502 Cco11g1497 Clacu11g1633 Cmu11g1451 Cre11g1869 . . . Cme04g00245
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002065 3 2 1 1 2 1 3 2 2 2 2 1 3 2 1 3 1 4 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02272 Lsi_Chr04 FPKM 5.631555 7.626171 1.464148 1.810778 1.451488 1.6538 1.934991 2.056301 2.387167 2.313973