Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02273 ATGTTTACCGAAGGACTCGATAAAAGTGCCCTTCGATGGGTTCGCGAGAAGGATGATACATTTGGTACTTCAAATTTGAGGTATCGAGCCGATCCGATTATTGGCGTCGGAGCGGGTACTGGAGCGAGGGGTTTTGGATTGCCACCGCCGTCGAAATTTAGAAGTGGCCACTTGCCGGCGAGTGGCATTGCAGTCTCGAGACCCATTTCTGGTCGTGTGGACGATAGTGCTTCTGCTTCAGAGAATGACATGTCTACTGACTCCGAAGAGGATGTTTATGGGGTTAGATATTCCTTAGACTCATCTCCCCAACACAACAGTGTTCCAAATCGTTCTACTTATAGATACGGAAATTCTTTGCAAGGGAGGTCAAATAATGGCAGTGATTACTTTTTCTCCGATGTTAGTTCATCGAGGGAAACGTTGGTTGGTGGTCATAGGCAAATGGCTGATAGGATGACGAGTAAAGTTGGGAGGTACCCAACTAAGCAAAATGGTTTTACAGAAGACGATTCTTCTGATTCTGCTGCAAGTTCTGAATTTTCTACTACACAAGTGGGGGGAAGTATTAATGGGGCTTTGCCTAGGAATAGAGCTTCCATGGCTTCAGAGGGATACTCATCAAGCCTACCATCACGTGTAACTGTGGGAAATGCACCTAAAAAGGATCTTCAGAATGGAAGGTTTTCTGATGACGATGACGAAGATGACATTCCCAGTGCCCCTCCGTTTTTGGCTTCATCACAGGAAATTAAACAATGTGCTGAAAAATGTCAAGATGTGAAGTTTGATGGCACACGTGATCATAAAACTCCATCTGGAGTCGCACTGCCGCAAGGAAATAAGAGCAGTGACCAGTTTGTCAGACCAGTGAATTCGGAAGCTGCTGGCAGTTCAGGATCGGCTCGCCTCCCCACGTATAATGCCAGTGCTTTAGGGCCTTGGCATGCAGTCATAGCATATGATGCATGCGTGAGATTATGTCTTCATGCTTGGGCAATGGAAAATATGGAAGCCCCGATGTTTTTGGAAAATGAATGTGCAGTATTACGAGATGCATTTGGTTTACGGCAAGTACTCTTACAGTCAGAGGATGAATTGCTGGTGAAGCGCACTTCAGAACTTGCCAATGAGGGAGCTCCTACCAAACCAAAGAAAATTATAGGCAAAATAAAGGTGCAAGTGCGGAAAGTGAAGATGGGGCTGGATCCACCAACAGGCTGTAATATTTTAGCTTTAAGACCACCTGCAGTAAATCTAGAAACCATCAAGTATCAATTTTCCAGCTTTCAGTCAGCAGTAGCCTCTGGATGGCATGCTTTGAATAAAATTCGTGTTGCACCACGAATACCTCCAAACAGTTCTCTATCAAGACAAAGCATGGCATACGTGCATGCAAGCACCCAGTACATCAAGCAGGTCTCCAAAGTTCTAAAAGTGGGTGTAACAACCCTGCGCAGCAGTTCATCATCTTATGAGGTGGTGCAAGAAACATACCCATGTTTACTCAGACTGAAAAGTTTAGCTGAGGAAGATGCCGTCAAAATGCAAGCTGGATCAGGAGAAACTCATGTTTTCTTTCCAGATGGTCTTGGTGATGATCTAATAATTGAAGTTCAGGATTCCAATGCAAAGCATATTGGTCGCGCCCTCCTGCAAATAGCTGCCATTACGGATAACCCAGCAGATAAATTACGTTGGTGGTCTATTTATCGTGAGCCTGAACATGAGCTTGTGGGCAAAATTCAACTCTACGTAAATTACTCAGCAAGTACAGATGATAATAATCACCCGAAGTGTGGTTCTGTGGCAGAAACAGTAGCATACGACCTAGTTCTTGAAGTTGCCATGAAAGTTCAGCATTTTCAACAGAGGAATCTTTTGTTGCATGGATCCTGGAAATGGCTTTTGACAGAGTTTGCATCATACTATGGCATTTCAGAAGTATATACCAGATTAAGATATCTTTCGTATATCATGGATGTGGCCACGCCAACAGCTGACTGCCTAACTTTGGTGTATGACCTGCTCATGCCTGTTGTTATGAAGGGCCATGACAAGAGTACGTTGAGTCATCAAGAGAACCGAATTTTAGGAGAAACCAGGGATCAAATTGAGCAAATACTTGCTCTTGTTTTTGAGAATTATAAATCACTTGACGAAGCAGCTCTCTCGGGTCTTATGGAGGTGTACAGACCAGCAACAGGGGTTGCAGCGCCTGCTCTAGAACCTGCAGTTAAATTGTACACTCTTCTTCATGATATTCTATCGCCGGAGGTTCAGACTTCCTTGTGCCATTATTTTCAGGTTTTGAGAAACTTTATCTCTGTAGGAAGTAGAATTGCATTTGCCAAATTGAATGTTCAAGTTTCCCCTAAGGGCTCATCTCTCCAGGTTGCTGTGAAAAAGAGATCAAGGAGGCACTTGAGTGAGACAGATGAATATATGGGTAACGGTAACGAAGGCAGTTTGGTAGATACGGTTACTATGTCTACTGCTTACCAAAAGATGAAATCGGTGTGTCTTGACATTAGGGGGGAGATATTCTCTGACATTGAGATCCATAATCAACACATACTTCCCAGTTTTGTAGACCTACCAAATCTCTCTGCTTCCATATATAGCACAGAGCTTTGCAGTAGATTGCGCTCTTTCCTAATTGCTTGCCCACCAACAGGCCCTTCACCTTCAGTAGCAGAACTTGTTATTGCGACTGCTGATTTTCAGAGGGACCTTGCCAGATGGAATATTAGTCCTGTGAAAGGTGGTGTTGATGCAAAAGAATTATTCCATCTGTATATTCTGGTGTGGATCCAGGATAAGCGCCTGTCGTTGCTTGAAACATGTAAATTGGATAAGGTCAAGTGGTCGGGAGTTAGAACTCGACATTCTACTACACCTTTTGTTGATGAAATGTATGACCGATTAAAGGAATCTTTGAGTGACTATGAGATTTTCATTTGTCGATGGCCAGAGTACACCTTTGTTTTGGAACAAGCTATTGCAGATGTTGAAAAAGCAATAGTGGAGGCATTGGATAAGCAGTATGCTGATGTGTTGGCACCACTAAAAGAAAATTTAGCACCCAAAAAGTTTGGACTTAAGTATGTCCAGAAACTTGCTAAACGATCTGTCAGCCCTTACACTGTTCCAGACGAGCTGGGGATTCTATTAAATTCCATGAAGAGGATGCTTGATGTTCTGCGCCCGAAGATAGAAGCGCAATTTAAGCTGTGGGGTTCCTGCATTCCTGAAGGTGGAAATGTAATTCCTGGTGAGCGTCTTAGTGAAACGAAGTTACAAAGTGCTACAAAGCTGAAAAAGATTCTACAAGACTCCAAGGAAGCTGTGATTGAATCAGAAATACGAAGCAGGATGCAACCACTGAAAGATCAGTTGTCAAACACGATAAATCATCTTCATACTGTCTTTGAGAGTCATGTATTCATTGCTCTATGTCGGGGTTATTGGGACCGGATGGGACGGGATGTTCTAAGCTTCATGGAGAACAGGAAAGAGAACAGGTCATGGTATAGAGGGTCGCGAATTGCAGTTTCGGTCCTCGACGATACATTTGCCTCACAGATGCAGCAGTTGCTCGGGAACTCGCTACAAGAGAAAGACCTCGAGCCACCAACCTCGATCACAGAAGTGCGATCGATGCTCTGCAAGGATTAA 3678 43.77 MFTEGLDKSALRWVREKDDTFGTSNLRYRADPIIGVGAGTGARGFGLPPPSKFRSGHLPASGIAVSRPISGRVDDSASASENDMSTDSEEDVYGVRYSLDSSPQHNSVPNRSTYRYGNSLQGRSNNGSDYFFSDVSSSRETLVGGHRQMADRMTSKVGRYPTKQNGFTEDDSSDSAASSEFSTTQVGGSINGALPRNRASMASEGYSSSLPSRVTVGNAPKKDLQNGRFSDDDDEDDIPSAPPFLASSQEIKQCAEKCQDVKFDGTRDHKTPSGVALPQGNKSSDQFVRPVNSEAAGSSGSARLPTYNASALGPWHAVIAYDACVRLCLHAWAMENMEAPMFLENECAVLRDAFGLRQVLLQSEDELLVKRTSELANEGAPTKPKKIIGKIKVQVRKVKMGLDPPTGCNILALRPPAVNLETIKYQFSSFQSAVASGWHALNKIRVAPRIPPNSSLSRQSMAYVHASTQYIKQVSKVLKVGVTTLRSSSSSYEVVQETYPCLLRLKSLAEEDAVKMQAGSGETHVFFPDGLGDDLIIEVQDSNAKHIGRALLQIAAITDNPADKLRWWSIYREPEHELVGKIQLYVNYSASTDDNNHPKCGSVAETVAYDLVLEVAMKVQHFQQRNLLLHGSWKWLLTEFASYYGISEVYTRLRYLSYIMDVATPTADCLTLVYDLLMPVVMKGHDKSTLSHQENRILGETRDQIEQILALVFENYKSLDEAALSGLMEVYRPATGVAAPALEPAVKLYTLLHDILSPEVQTSLCHYFQVLRNFISVGSRIAFAKLNVQVSPKGSSLQVAVKKRSRRHLSETDEYMGNGNEGSLVDTVTMSTAYQKMKSVCLDIRGEIFSDIEIHNQHILPSFVDLPNLSASIYSTELCSRLRSFLIACPPTGPSPSVAELVIATADFQRDLARWNISPVKGGVDAKELFHLYILVWIQDKRLSLLETCKLDKVKWSGVRTRHSTTPFVDEMYDRLKESLSDYEIFICRWPEYTFVLEQAIADVEKAIVEALDKQYADVLAPLKENLAPKKFGLKYVQKLAKRSVSPYTVPDELGILLNSMKRMLDVLRPKIEAQFKLWGSCIPEGGNVIPGERLSETKLQSATKLKKILQDSKEAVIESEIRSRMQPLKDQLSNTINHLHTVFESHVFIALCRGYWDRMGRDVLSFMENRKENRSWYRGSRIAVSVLDDTFASQMQQLLGNSLQEKDLEPPTSITEVRSMLCKD 1225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29751907 29762256 + Lsi04G022730.1 Lsi04g02273 662322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02273 1225 MobiDBLite consensus disorder prediction 158 191 - -
Lsi04g02273 1225 MobiDBLite consensus disorder prediction 47 246 - -
Lsi04g02273 1225 MobiDBLite consensus disorder prediction 265 303 - -
Lsi04g02273 1225 MobiDBLite consensus disorder prediction 276 303 - -
Lsi04g02273 1225 MobiDBLite consensus disorder prediction 99 143 - -
Lsi04g02273 1225 MobiDBLite consensus disorder prediction 201 215 - -
Lsi04g02273 1225 PANTHER - 1 770 - -
Lsi04g02273 1225 PANTHER - 795 1225 - -
Lsi04g02273 1225 PANTHER PESTICIDAL CRYSTAL CRY8BA PROTEIN 1 770 - -
Lsi04g02273 1225 PANTHER PESTICIDAL CRYSTAL CRY8BA PROTEIN 795 1225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02273 - - - csv:101206197 2206.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02273 Lsi-Chr4:29751907 Lsi10g00026 Lsi-Chr10:429925 0 dispersed
Lsi01g00803 Lsi-Chr1:6345505 Lsi04g02273 Lsi-Chr4:29751907 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g490 . Blo12g00727 . . Bpe02g00136 . Bma04g00435 Bma01g02589 . . Cma01g01639 Cma09g00589 . . . Cpe06g00450 . . . . . . . . . . . . . . . . Cone9ag1452 . . Lsi04g02273 Csa03g04484 Chy04g00216 . . . Bda11g00795 . . . . . Sed01g0609 Cmo01g01687 Cmo09g00575 . . . Car09g00520 . . Bhi09g02488 Tan01g3841 Cmetu04g2748 . Hepe01g2163 Mch11g0702 . Cla11g01416 Cam11g1473 Cec11g1503 Cco11g1498 Clacu11g1634 Cmu11g1452 Cre11g1870 . . . Cme04g00244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004017 1 1 2 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02273 Lsi_Chr04 FPKM 180.38945 187.284943 127.507477 125.987976 38.915089 44.092041 40.074413 156.903519 154.37384 169.408478