Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02274 ATGGCTTGTAAGTTCCTGTTTCCTCCCTTACTAGCTTCATTTCTTTTACTTTTAACCCTCTTCACCTCTTCATTTGCTGCAAATGATTCTCTCACTAATTCTTTCCCTGCAAAATCCATTTGCAAATCAACCTCAAATCCTTCTTACTGCATCACTGTGCTTAAAAAATCCACAGGTGGCAATGTCTACGACTCTGGCCGTTTTTCGATCCGTCATTCTTTATCTAAAGCATCTAGATTCTTTGACTTGATTGAGAAGCATCTTCAAAACACTTCAACTCTACCAAAATCCATCACTGGAGCTCTTACAGATTGTCAGTATCTTGCTCAACTGAATATCAATTTCTTGTCGAATTCGTTTCGGGCCATTAATGGCACTGATAAAAAGCTAACTTACTCCAAAGCTGATTATATCCAAAGTCTTCTTAGTGCCATTTTAACCAACATTGATACTTGTCTTGATGGTCTAAAAACTGTAGCCTCAGGTTCTAGTTTGGAGAAAGATTTGTTAGCTCCACTTATTGATTGTACCAAATCATACAGTCTTTCACTAGATCTTTTTACAAAGGGCTGGGTTCCTAGGAGGAATAGAAACAGAACACTTGAGCAACCTGGGAAAAAACACCTGCAGTTTAGGAAAGGACCATTACCGTTGAGAATAATGTCGAGACGTGACCGAGAAGTTTACGACTCGGTGGCAAATCGAAGAAAACTTTCGTCTTCATCAGATGATGGAGTTTTGGTTAATGGTATTGCAGTTGTGAGTCAAGATGGCAAAGGAGACTTCCTTAACATCACAGAAGCTGTTAATGCAGCTCCAAACAACTCTCTTGCTGCCAATGGCTACTTCTTGATTTACATTACGGCTGGTGTTTACCAAGAGTATGTGTCTATCCCTTCAAAGAAGAAGTATTTGCTGATGATTGGAGATGGTATAAATCAGACCATCATTACGGGCAACCGGAGCGTTTCAGACGGATGGACGACGTTCAATAGTGCAACTTTTGCTGTAGCAGCAGAAGGATTCATGGCAGTGAACATAACCTTCCAAAACACAGCTGGAGCAATCAAAGGCCAAGCAGTTGCATTAAGAAGTGGAGCTGACATGTGTGTTTTTTACAGCTGCAGTTTTGAAGGCTACCAAGACACCTTATACACTCATTCCCTCAGACAATTCTTTAGAGAATGTGATATTTATGGCACTGTAGACTTCATATTTGGAAATGCTGCTGTTGTCTTCCAAAACTGTAACATATATCCCCGTCTTCCCCGTCCCGGTCAGGCCAACATGATCACAGCTCAAGGCCGATCGGATCCTAACCAAAACACCGGGACTTCAATTCACAACTGCACGATCCGAGCCACGAGCGATTTGGCTGCAAGTAGCAGCTATATGAACAAGACATATCTGGGAAGGCCATGGAAGCAATATTCAAGAACAGTGTATATGCAAACATTTATAGATGAGTTTGTAAATCCTGGTGGTTGGGATCCATGGTCAGGGGAATATTTGAGCACATTGTATTATGGAGAGTATAATAATAGAGGAGGTGGATCAAATACAAAGAACAGAGTTACTTGGCCAGGTTATCATGTGATCAATAATGCAACAGATGCTGCCAATTTTACAGTTTCAATATTCTTGGTTGGGGATGTGTGGTTGCCTCCAACTTGTGTGCCTTATACTGGAGAGGTGAAGCTCTTAGTGAAGTTGGAGGCTCGCTTGAAGCTATTTGGTCCCTTATCCCCAATTCCAGCAAAAATCCAAGACCTAATTCGTTTCGGAGGTTTTGAGGAATAG 1800 41.39 MACKFLFPPLLASFLLLLTLFTSSFAANDSLTNSFPAKSICKSTSNPSYCITVLKKSTGGNVYDSGRFSIRHSLSKASRFFDLIEKHLQNTSTLPKSITGALTDCQYLAQLNINFLSNSFRAINGTDKKLTYSKADYIQSLLSAILTNIDTCLDGLKTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRRNRNRTLEQPGKKHLQFRKGPLPLRIMSRRDREVYDSVANRRKLSSSSDDGVLVNGIAVVSQDGKGDFLNITEAVNAAPNNSLAANGYFLIYITAGVYQEYVSIPSKKKYLLMIGDGINQTIITGNRSVSDGWTTFNSATFAVAAEGFMAVNITFQNTAGAIKGQAVALRSGADMCVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPRPGQANMITAQGRSDPNQNTGTSIHNCTIRATSDLAASSSYMNKTYLGRPWKQYSRTVYMQTFIDEFVNPGGWDPWSGEYLSTLYYGEYNNRGGGSNTKNRVTWPGYHVINNATDAANFTVSIFLVGDVWLPPTCVPYTGEVKLLVKLEARLKLFGPLSPIPAKIQDLIRFGGFEE 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29762910 29766546 - Lsi04G022740.1 Lsi04g02274 662323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02274 599 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 160 IPR006501 GO:0004857
Lsi04g02274 599 Pfam Pectinesterase 252 551 IPR000070 GO:0030599|GO:0042545
Lsi04g02274 599 Gene3D - 248 565 IPR012334 -
Lsi04g02274 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Lsi04g02274 599 PANTHER PECTINESTERASE 14 563 - -
Lsi04g02274 599 PANTHER PECTINESTERASE 14 563 - -
Lsi04g02274 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 189 IPR035513 -
Lsi04g02274 599 CDD PMEI-like_3 39 191 - -
Lsi04g02274 599 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Lsi04g02274 599 SUPERFAMILY Pectin lyase-like 249 562 IPR011050 -
Lsi04g02274 599 SMART PMEI_2 32 186 IPR006501 GO:0004857
Lsi04g02274 599 Pfam Plant invertase/pectin methylesterase inhibitor 38 166 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02435 Lsi-Chr2:30917973 Lsi04g02274 Lsi-Chr4:29762910 0 dispersed
Lsi04g02274 Lsi-Chr4:29762910 Lsi10g00656 Lsi-Chr10:9123500 0 dispersed
Lsi04g02274 Lsi-Chr4:29762910 Lsi04g00186 Lsi-Chr4:1991203 6.81E-161 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02274 K01051 - csv:101205879 1019.61