Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02275 ATGGAGTTCAAGCAATCCATGGCGTTCAGCTTGGTTCAAGCTTTCCGAGCAAAGCCCCAACAGTATGACCACGTTCCTGGTGTGTATTTGGTAATTAAGCACCCTGCATCAGAATCTAGGGTTTTGAGATTTCTTGCTCGAGCCGTCCTCTTGGCTTTGTTCATCGTTTCCTTACCTTATTTCGGATCCATTCTCAGAGGATCCTCAATCGCGTCAAACAATGCTGAATTTGGCACTGATAATGATATCGGCATTTTCTCTTTTGAAATCAAAGACAAATCAAATAACTACAGAATCGTTTACCTCGAACAATCTGATTCTACTCTCGTCGACATGGAGAAGACCGAATTAGGCCAAAATGAGATCAAATCCCCCTCTCGGAGACGACTCTTCGCATACGAATCTGACGCTAAAAGAGCAGCCCTAAATGAACTCGAAGACGTCCTCCTCGAACCACCGCGAGCAGCGTCGCGAAAATCGAGGCGGTACTTGCAACGAACACGATACCTTCCAGATTTGATGGGCGATTCTCTCGAAGGCTACCCCCGCCATGTTTTCATCGACGCCGGAATTCCGGAGAAGGAAGGCGGAAGCGGTACAAGCTGGTTCGACAACAACTACCCAACCAGAAACAAGAAATTCGAAATATACAATATCGAGACAGTGAGTGCCGATCAGGAGCCATCCTCAAACGCATTGCAGGTCGGCATATCGGACTGGCTGTCAAATAACGTAAAAGCCGAAGATTACGTCGTAATGAAAGCTGAAGCCGAGGTTGTGGAGGATATGATGAAATCCAAGGCCGTACGGTTGGTCGACGAACTTTTCTTGGAATGCAAGCCACAGAAAAACGGTGGCAGGAAGGTCTCCGGCGGCGGCCGCCGAGCTTACTGGCAGTGTTTGGCCTTGTACGGCCAGCTCCGAGACGAAGGTGTGGCAGTTCATCAATGGTGGGGTTAA 960 48.65 MEFKQSMAFSLVQAFRAKPQQYDHVPGVYLVIKHPASESRVLRFLARAVLLALFIVSLPYFGSILRGSSIASNNAEFGTDNDIGIFSFEIKDKSNNYRIVYLEQSDSTLVDMEKTELGQNEIKSPSRRRLFAYESDAKRAALNELEDVLLEPPRAASRKSRRYLQRTRYLPDLMGDSLEGYPRHVFIDAGIPEKEGGSGTSWFDNNYPTRNKKFEIYNIETVSADQEPSSNALQVGISDWLSNNVKAEDYVVMKAEAEVVEDMMKSKAVRLVDELFLECKPQKNGGRKVSGGGRRAYWQCLALYGQLRDEGVAVHQWWG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29771173 29772378 + Lsi04G022750.1 Lsi04g02275 662324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02275 319 PANTHER PROTEIN, PUTATIVE-RELATED 92 319 - -
Lsi04g02275 319 PANTHER OS02G0760400 PROTEIN 92 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02275 - - - mcha:111009513 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00722 Lsi-Chr3:9649367 Lsi04g02275 Lsi-Chr4:29771173 6.02E-13 dispersed
Lsi04g02275 Lsi-Chr4:29771173 Lsi03g02257 Lsi-Chr3:33511786 3.77E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g495 . Blo12g00728 . Bda03g00460 Bpe02g00137 Bpe04g00421 . Bma01g02588 . . . . . . . Cpe06g00451 . . . . . . . . . . . . . . . . . . . Lsi04g02275 Csa03g04487 Chy04g00213 . . . Bda11g00796 . . . . . . Cmo01g01690 Cmo09g00576 . . . . . . . . . . . . . Cla11g01419 Cam11g1475 Cec11g1505 Cco11g1501 Clacu11g1636 Cmu11g1454 Cre11g1872 . . . Cme04g00243
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005325 2 0 3 1 2 0 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02275 Lsi_Chr04 FPKM 24.646326 25.936655 4.863663 5.586123 7.730937 8.565415 8.423338 0.0 0.467621 0.546207