Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02276 ATGCTTGTTTCGGGAAATATAGGGCTTCAGGTCCTCTTGGTGTTTGTTGTTTTCCCAGTAATCTGCTTGGTAATCCGGCGGAAATGGAGGCTCTCTGTGGCGAGGAAGGAAGAAATTAATCGTTTGTTAGTTTTGTCGTCTGAGGAGGCTTTTAGAGCTGAGATTGAGGCCTCTGCTGGGTATACTTCTTCATCGTTTACTCCTCTTGGTCACCAGTGTGCTGTCTGTTACTCTCCAACAACCACACGCTGCGCTCGGTGCAAAGCGGTTCGATATTGGTATATCGGGTTCATTTTGAAATTAATGTGTGAGAAATTGTTGCCTTCGGATTCTGCCATAGAGGCATTGGCCGTACCTTCTCAAATCGATGACACAATTACTTCTACAGTTATTTATTATTATTATTATTATTATTTAGTATATGTGCATCTCAATATTTTCTTATCCTTTCAAGTGCTTTTAATGTGCTGCCTTTCTGGTAAGTGTCAAATCATACACTGGCGACAAGGCCATAAGGAAAATTGCCATCCTCCCAGCATCTCCAATCGATCTGCAGCATCTAGAACAGATTTCGAGCCAAAAGTGACAGAACAAGATCATTATGAATCATCTACTTCTGACTCATCAGCTGCATCATTTTCTGGCTTCTCTAGTTCAATTCTAAGCAGTGAATCATCTGATGATACTTCTACTAGTGATAGTAGTAGTCAAATCGAACCAGAGAAATTCGATGGATATATGTCTGCTGATGCAACACCCGACTCACTTGAAATTACAAGAGGCATTGACATTGGTGATCAACCCAAGCCATTGTCACCCATGTTCGGTAACCTGGTTGATTCTGTGGATAGTTTTCCCTCATCTAGTAAACTGAATCAGCTTAAACCCAGTGGCAGTCATGAAAAGGATTCACGTTCTTCCATAAATTCTTCTAGTTTTGTAATTGGTGGCAATCATAAAGAGTCTGGTGCAACGGTTCCTTCTGATTTTTGGGCTAGAACTCTTGACCATAAGGGATCTACAAGCGATTCCCTGGGTAATTCTGCTGTACCCAAATTCAGTGGAGGCCATGGTAGGAAGTTTTCTAGTCCGTCGTCATTTTCGTTTAACTCATCAAATGTTTTGCAAGCATGCAACTCTGATGAAATGAATGCATCCAACATCACTCTTCCTGGTGCCTTAGAGGATACGAAAGGTAAAAAGCCTGTGGATGGGGAAAATTTATCAAAAAACTATGCTATCCCTTCAAATGTCTGCAATCCTGCCCCTTCCAATAATCAAGGGCATAAAAAAACTGGTAACTTTAAGCCAGCATCAACTTCCCATGTACTTAGATCCAAGTCAACCTCGGGTGTTCGTCCACCAAATGGTTCAGGAAAAACACTTGATTCTAATGTCAGCATCTCGCCACCTTTGAGATCTGAAAGGTCAAGTAAAGTTGTGGTTGACACTATTTCAAAGGTACAGAGTAAAGATGGAAATTTCTCACAAAGAAAAATTGATTCTGAATGTTCTCTACCTTCAAGTGCTGGAGGGAAATCAGTTTTACTTTCACGCATTCAGTCAGGAAGAGTAGATACGATGCAGGCAACTTCTGGCATTACCTCTCAAGTTGCATGTACTCTCAACTCTAAAAATGGCTTGAAAACGTCCATGTTGAAAGTTGTTGATCAGTTTAGAGGGTCCAAGTTGTTAAAAAACAGTCATGCTTGTAGTGTCACTGAGAATCCTGGAAGGTTCAACTATAAGGGGGTTTTCTCATATGATCACTTTGTTAAGCTTTATAATTGGAACAAGTTGGAATTGCAGCCGGCAGGCCTCATTAATTGTGGGAACAGCTGCTATGCTAATGCTGTACTCCAGTGCCTCGCATTCACTCCACCTTTGACTGCTTATTTTCTCCAAGGACTTCATTCCAAATCATGTATTAAGAAGGGGTGGTGTTTTAATTGTGAGTTTGAAAGTCTAATTTTGAAAGTCAAGGAAGGGAGATCCCCATTATCTCCTGTTGGAATAATTTCTCAGCTACCTAATATTGGTCGTCAACTTGGTAATGGGAAAGAAGAGGATGCACACGAATTTCTGAGGTGTGTGATTAAATTATTTTGGATAAAATGCACAAGGTGCCAAGGCAGATCAGAACGGCAGGAAAGGATTATGGACCTTACAGTTGAGATAGAAGGGGACATCGGTAGACTGGATGAGGCTCTTCGAAAATTTACTAGCAAAGAGATTTTGGACGGTGACAACAAATATTTGTGTAGCAGATGCAAATCTTATGTAAGGGCAACAAAGAAATTGAAAATATTGGAAGCTCCCAATATTCTCACTGTCGTATTAAAGCGCTTTCAGTCAGGTAATTTTGGAAAGCTCAATAAGCCTATCAAGTTCCCCGAGATATTAGATCTGGCACCATTTATACGTGGAACCAGTGATAAATCGCCCGTATACAGGCTCTATGGAGTGGTTGTTCACTTGGATGTCATGAATTCTTCGTTTTCGGGACACTACGTGTGCTATGTCAAGAATTCCAAAAATAAGTGGTTCAAGATTGATGATAGCACGAATAGCCTTGGCTTTTCCTTTCACCTTTTAGTCATTACCGTGGCATTTGATCAACAATCCTTATACAAGCCAGTAACTCCCGTCGACATTGAAACCGTATTGACAAAAGGAGCCTACATGCTTCTTTACTCAAGGTGCTTGCCCAGGGCTCCTAGATTATTACGGCACGGTACTGTTGCTGTCGATTTGAAGACGAAAGCAGCACATTCCAGAACAGATGAAAGGAATACAACAGCTAAAACCACAAGCACTTCCACACGTCAGTCTTACCCAAGGGATACTCCTGGTGAACCTGGAAGCATTGGCTCCATTCATTTTGGACATCCTCAGATTCATAGGATTTTTGAAGAGGACTCATCCAGTGATCATTCATCTCTCATCAGCAGTACCTCTGATGAAGGTTCCTACAGCACGGAGAGCACTCGTGACTCTACAAGCGCCGATGAGTTGTCAGATTATATATTTGGTGATCCGAGGTATGCATCGCCTTCTCCCGCTCGTGCAGAGCCTACTGTGGGAATTAATGATCTTACAGAAGACATAAGGGGAGAGGAAGTGTCTCGTTTTTGCCATCTGACTCGAGTAGGCGAGGTAGAAATATAG 3168 41.73 MLVSGNIGLQVLLVFVVFPVICLVIRRKWRLSVARKEEINRLLVLSSEEAFRAEIEASAGYTSSSFTPLGHQCAVCYSPTTTRCARCKAVRYWYIGFILKLMCEKLLPSDSAIEALAVPSQIDDTITSTVIYYYYYYYLVYVHLNIFLSFQVLLMCCLSGKCQIIHWRQGHKENCHPPSISNRSAASRTDFEPKVTEQDHYESSTSDSSAASFSGFSSSILSSESSDDTSTSDSSSQIEPEKFDGYMSADATPDSLEITRGIDIGDQPKPLSPMFGNLVDSVDSFPSSSKLNQLKPSGSHEKDSRSSINSSSFVIGGNHKESGATVPSDFWARTLDHKGSTSDSLGNSAVPKFSGGHGRKFSSPSSFSFNSSNVLQACNSDEMNASNITLPGALEDTKGKKPVDGENLSKNYAIPSNVCNPAPSNNQGHKKTGNFKPASTSHVLRSKSTSGVRPPNGSGKTLDSNVSISPPLRSERSSKVVVDTISKVQSKDGNFSQRKIDSECSLPSSAGGKSVLLSRIQSGRVDTMQATSGITSQVACTLNSKNGLKTSMLKVVDQFRGSKLLKNSHACSVTENPGRFNYKGVFSYDHFVKLYNWNKLELQPAGLINCGNSCYANAVLQCLAFTPPLTAYFLQGLHSKSCIKKGWCFNCEFESLILKVKEGRSPLSPVGIISQLPNIGRQLGNGKEEDAHEFLRCVIKLFWIKCTRCQGRSERQERIMDLTVEIEGDIGRLDEALRKFTSKEILDGDNKYLCSRCKSYVRATKKLKILEAPNILTVVLKRFQSGNFGKLNKPIKFPEILDLAPFIRGTSDKSPVYRLYGVVVHLDVMNSSFSGHYVCYVKNSKNKWFKIDDSTNSLGFSFHLLVITVAFDQQSLYKPVTPVDIETVLTKGAYMLLYSRCLPRAPRLLRHGTVAVDLKTKAAHSRTDERNTTAKTTSTSTRQSYPRDTPGEPGSIGSIHFGHPQIHRIFEEDSSSDHSSLISSTSDEGSYSTESTRDSTSADELSDYIFGDPRYASPSPARAEPTVGINDLTEDIRGEEVSRFCHLTRVGEVEI 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29785323 29791808 + Lsi04G022760.1 Lsi04g02276 662325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 202 241 - -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 17 92 - -
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 920 1029 - -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 159 200 - -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 880 1013 - -
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 286 320 - -
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 303 318 - -
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 410 480 - -
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 338 366 - -
Lsi04g02276 1055 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 605 901 IPR028889 -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 159 200 - -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 880 1013 - -
Lsi04g02276 1055 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 606 621 IPR018200 GO:0004843|GO:0006511
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 704 855 - -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 92 - -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 189 699 - -
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 976 1003 - -
Lsi04g02276 1055 Gene3D Cysteine proteinases 703 902 - -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 189 699 - -
Lsi04g02276 1055 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 704 855 - -
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 178 251 - -
Lsi04g02276 1055 Pfam Ubiquitin carboxyl-terminal hydrolase 606 898 IPR001394 GO:0004843|GO:0016579
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 932 948 - -
Lsi04g02276 1055 SUPERFAMILY Cysteine proteinases 602 901 IPR038765 -
Lsi04g02276 1055 MobiDBLite consensus disorder prediction 389 480 - -
Lsi04g02276 1055 Gene3D Cysteine proteinases 598 702 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02276 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101205725 1415.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01366 Lsi-Chr4:21441899 Lsi04g02276 Lsi-Chr4:29785323 1.53E-97 dispersed
Lsi04g02276 Lsi-Chr4:29785323 Lsi11g00675 Lsi-Chr11:7112378 9.50E-48 dispersed
Lsi08g01141 Lsi-Chr8:20042566 Lsi04g02276 Lsi-Chr4:29785323 2.10E-24 transposed
Lsi04g02276 Lsi-Chr4:29785323 Lsi08g01030 Lsi-Chr8:18894967 1.09E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g269 . . . Bda03g00459 . . . . Cmo05g00665 . . . . . Sed01g1313 . . Bhi04g01060 Tan02g2655 Cmetu03g1138 . . . . . . . . . . . . . . . Lsi04g02276 . . Cme03g01678 . . . Bda13g01355 . Bpe04g00420 . . . . . . . . Car05g00581 Cpe11g00560 . . . . . . . . Cla08g01169 Cam08g1632 Cec08g1206 Cco08g1329 Clacu08g1330 . Cre08g1114 . . Chy03g01302 .
Vvi18g499 . Blo12g00729 . Bda03g00459 . Bpe04g00420 Bma04g00434 . . Cmo12g00149 Cma01g01643 Cma09g00591 . Car12g00176 . Cpe06g00452 Cpe07g00164 . . . . . . . . . . . . . . Cone4ag1301 Cone7ag0854 . . Lsi04g02276 Csa03g04488 Chy04g00212 . . . . . . . . Bma02g00109 Sed05g1565 Cmo01g01692 Cmo09g00577 Cma12g00195 . . Car09g00522 . . Bhi09g02494 Tan01g3848 Cmetu04g0414 . Hepe01g2166 Mch11g0705 . Cla11g01420 Cam11g1476 Cec11g1506 Cco11g1502 Clacu11g1637 Cmu11g1455 Cre11g1873 . . . Cme04g00241
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004348 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02276 Lsi_Chr04 FPKM 1.801932 1.551127 0.0 0.0 0.825736 0.552861 0.0 0.0 0.0 0.0