Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02277 ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCTCAGCCTTTTCCCCGTTCTTTTTCCGTCGCCGCCACTCCACCGCCGCGCGATTCTTCCGCATCCGCCGATGAGGATTCCGCGGCCGGGCCCTCGCCTCTCACTCACGCCATGGTCCTCAAAGAACCGACCTCCACCGGCGACGGCGCTTCCATCGAGGTCGTCCGACGCCCCCGAGGTCGCCCGCCGGGATCCAAGAACAAGCCAAAACCGGCGGCCGTCGTCGTCGCTGGCCGCGAAGCTGAGCCGGCGATGAGTCCTTATGTACTCGAAGTCCCCGGCGGTAGCGATGTCGTCGAATCGATTTCCCGATTTTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCCTACGGAACCGTCGCCGACGTCACTCTCCGGCAACCGTCTTCGTCTCCGGTCGGTACAGTCACTTTCCATGGACGATTCGATATTCTATCCGTCTGCGCCACTTTTGTTCCTCACACGACGTCGTTTCCAATACCTAACGGATTCACCATCACGCTAGCGGGACCGCAGGGCCAGATCTTTGGCGGCTTAGTCGCCGGATCTTTAATCGGCATCGGAACCGTCTATGTTATAGCCGCCTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCGGAGGATGAGGTCAGAAAATTAACCTTCAGCGATGTGGAAGAAGGCCACTCTCCGATCTCTGGCGGCAAAGATAGCGAAAGCACCGCCGCGGCCGCCACCACCGAGACCTGCGGTCTGCTGCCGATGTACAGCACTCACTCGTCTTCCGACGTAATATGGACTCCGGCCGCCAGACAACCGCCTCCGCCGCACCATCGCCAGTACTAA 870 60.0 MFPKPHHQPPPHSQPFPRSFSVAATPPPRDSSASADEDSAAGPSPLTHAMVLKEPTSTGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGREAEPAMSPYVLEVPGGSDVVESISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVGTVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGSLIGIGTVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEGHSPISGGKDSESTAAAATTETCGLLPMYSTHSSSDVIWTPAARQPPPPHHRQY 289
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 29799053 29799922 - Lsi04G022770.1 Lsi04g02277 662326
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02277 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 213 IPR005175 -
Lsi04g02277 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 12 284 - -
Lsi04g02277 289 ProSiteProfiles PPC domain profile profile. 94 234 IPR005175 -
Lsi04g02277 289 MobiDBLite consensus disorder prediction 1 85 - -
Lsi04g02277 289 MobiDBLite consensus disorder prediction 1 16 - -
Lsi04g02277 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Lsi04g02277 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 284 IPR014476 GO:0003680
Lsi04g02277 289 Gene3D - 98 237 - -
Lsi04g02277 289 MobiDBLite consensus disorder prediction 233 252 - -
Lsi04g02277 289 CDD DUF296 99 211 IPR005175 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02277 Lsi-Chr4:29799053 Lsi09g01252 Lsi-Chr9:20189174 2.77E-42 dispersed
Lsi06g00579 Lsi-Chr6:7657690 Lsi04g02277 Lsi-Chr4:29799053 8.68E-06 dispersed
Lsi04g02277 Lsi-Chr4:29799053 Lsi08g01029 Lsi-Chr8:18881225 3.03E-100 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02277 - - zju:107421268 291.197