Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g02277 | ATGTTCCCAAAGCCCCACCACCAACCACCGCCCCATTCTCAGCCTTTTCCCCGTTCTTTTTCCGTCGCCGCCACTCCACCGCCGCGCGATTCTTCCGCATCCGCCGATGAGGATTCCGCGGCCGGGCCCTCGCCTCTCACTCACGCCATGGTCCTCAAAGAACCGACCTCCACCGGCGACGGCGCTTCCATCGAGGTCGTCCGACGCCCCCGAGGTCGCCCGCCGGGATCCAAGAACAAGCCAAAACCGGCGGCCGTCGTCGTCGCTGGCCGCGAAGCTGAGCCGGCGATGAGTCCTTATGTACTCGAAGTCCCCGGCGGTAGCGATGTCGTCGAATCGATTTCCCGATTTTGCCGCCGCAGAAACACAGGGCTCTGTATTCTCAACGCCTACGGAACCGTCGCCGACGTCACTCTCCGGCAACCGTCTTCGTCTCCGGTCGGTACAGTCACTTTCCATGGACGATTCGATATTCTATCCGTCTGCGCCACTTTTGTTCCTCACACGACGTCGTTTCCAATACCTAACGGATTCACCATCACGCTAGCGGGACCGCAGGGCCAGATCTTTGGCGGCTTAGTCGCCGGATCTTTAATCGGCATCGGAACCGTCTATGTTATAGCCGCCTCATTCAACAATCCGTCGTATCAGCGGCTGCCATCGGAGGATGAGGTCAGAAAATTAACCTTCAGCGATGTGGAAGAAGGCCACTCTCCGATCTCTGGCGGCAAAGATAGCGAAAGCACCGCCGCGGCCGCCACCACCGAGACCTGCGGTCTGCTGCCGATGTACAGCACTCACTCGTCTTCCGACGTAATATGGACTCCGGCCGCCAGACAACCGCCTCCGCCGCACCATCGCCAGTACTAA | 870 | 60.0 | MFPKPHHQPPPHSQPFPRSFSVAATPPPRDSSASADEDSAAGPSPLTHAMVLKEPTSTGDGASIEVVRRPRGRPPGSKNKPKPAAVVVAGREAEPAMSPYVLEVPGGSDVVESISRFCRRRNTGLCILNAYGTVADVTLRQPSSSPVGTVTFHGRFDILSVCATFVPHTTSFPIPNGFTITLAGPQGQIFGGLVAGSLIGIGTVYVIAASFNNPSYQRLPSEDEVRKLTFSDVEEGHSPISGGKDSESTAAAATTETCGLLPMYSTHSSSDVIWTPAARQPPPPHHRQY | 289 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 29799053 | 29799922 | - | Lsi04G022770.1 | Lsi04g02277 | 662326 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g02277 | 289 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 99 | 213 | IPR005175 | - | |
| Lsi04g02277 | 289 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED | 12 | 284 | - | - | |
| Lsi04g02277 | 289 | ProSiteProfiles | PPC domain profile profile. | 94 | 234 | IPR005175 | - | |
| Lsi04g02277 | 289 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| Lsi04g02277 | 289 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Lsi04g02277 | 289 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 96 | 223 | - | - | |
| Lsi04g02277 | 289 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 12 | 284 | IPR014476 | GO:0003680 | |
| Lsi04g02277 | 289 | Gene3D | - | 98 | 237 | - | - | |
| Lsi04g02277 | 289 | MobiDBLite | consensus disorder prediction | 233 | 252 | - | - | |
| Lsi04g02277 | 289 | CDD | DUF296 | 99 | 211 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g02277 | Lsi-Chr4:29799053 | Lsi09g01252 | Lsi-Chr9:20189174 | 2.77E-42 | dispersed | |
| Lsi06g00579 | Lsi-Chr6:7657690 | Lsi04g02277 | Lsi-Chr4:29799053 | 8.68E-06 | dispersed | |
| Lsi04g02277 | Lsi-Chr4:29799053 | Lsi08g01029 | Lsi-Chr8:18881225 | 3.03E-100 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g02277 | - | - | zju:107421268 | 291.197 |