Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02278 ATGGAAAATTCCAATAGGGTTGAAGCAGAACGCTTGCTTGGAATCGCTGAGAAACTCTTGCACACCCGTGATTTCACCGGCTCTAGAGATTTCGCCATTTTAGCTCAAGAAACTGAGCCCCTTTTGGATGGCTCCGATCAGATCTTAGCTGTTGCCGATGTGTTATTGGCGTCGGAGAAGCGAATCAACAATCACAATGATTGGTATTCGATTCTTCAGATTGAACGACGATCTGATGATCCAGATCTCATCAAGAAGCAGTATCGGAAACTTGCGTTACTTCTACATCCCGATAAGAACAAATTTCCCTTTGCTGATCAAGCTTTCAAGTTGGTAGCGGATTCATGGGCTGTATTATCCGACCACTCGAAGAAATCGCTCTACGATAACGAGCTCAACCTCTTCGCGAAGATCGATTTGTCTCAGCAGAACAAATTGCCAGTGCGCCGGAGCCAACGATCTAGTGGGAAGAAACAACAAGGGTTTGAGAGTAACGACAGCGCCAACACCAACGCCGATCAATCTCCGAATCAGCGGCTGAAATTATCGAGTTTCTGGACCGCTTGCCCTTACTGTTACGTGTTATTTGAGTATCCTAGGGTTTATGAGGGTTGCTGTTTGCGGTGTCAGAATTGCAAGAGAGCATTTCAGGCGGTGTTGCTTCCGTCGCTTCCGCCGCTCGTTCAGGGCCAGGAAGCCTACTATTGCTGCTGGGGTTTCTTTCCGATGGGGTTTGCAGCTCAATATACCGAGAAAGGTGGGAAGGGCAGCGAAACAGCGCCACCAACAGCGGCGTTCCCCAATTGGATGCCCCCAATATTTTCTAACAAACCTCAAGAAACTACTAGGAATGGAGAAACGGCAGCGGCGGTGGCGGCGGAGGGGACGCCAACAGGTAGAGAGGGAGCGGCGGTGGATGCTCCTCCCGTTGCTAGGGCTCCGATAGTGAGAAGCACTGGCACAGGTAAGAAGAGGGGCAGGCCGCGGAAAAATCCGATTGCAGCCTAA 1008 50.3 MENSNRVEAERLLGIAEKLLHTRDFTGSRDFAILAQETEPLLDGSDQILAVADVLLASEKRINNHNDWYSILQIERRSDDPDLIKKQYRKLALLLHPDKNKFPFADQAFKLVADSWAVLSDHSKKSLYDNELNLFAKIDLSQQNKLPVRRSQRSSGKKQQGFESNDSANTNADQSPNQRLKLSSFWTACPYCYVLFEYPRVYEGCCLRCQNCKRAFQAVLLPSLPPLVQGQEAYYCCWGFFPMGFAAQYTEKGGKGSETAPPTAAFPNWMPPIFSNKPQETTRNGETAAAVAAEGTPTGREGAAVDAPPVARAPIVRSTGTGKKRGRPRKNPIAA 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29808025 29809032 - Lsi04G022780.1 Lsi04g02278 662327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02278 335 SUPERFAMILY Chaperone J-domain 62 133 IPR036869 -
Lsi04g02278 335 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Lsi04g02278 335 Gene3D DnaJ domain 55 154 IPR036869 -
Lsi04g02278 335 SMART dnaj_3 66 124 IPR001623 -
Lsi04g02278 335 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Lsi04g02278 335 CDD DnaJ 67 121 IPR001623 -
Lsi04g02278 335 Pfam DnaJ domain 67 129 IPR001623 -
Lsi04g02278 335 MobiDBLite consensus disorder prediction 146 176 - -
Lsi04g02278 335 MobiDBLite consensus disorder prediction 254 335 - -
Lsi04g02278 335 PRINTS DnaJ domain signature 69 87 IPR001623 -
Lsi04g02278 335 PRINTS DnaJ domain signature 104 124 IPR001623 -
Lsi04g02278 335 PRINTS DnaJ domain signature 88 103 IPR001623 -
Lsi04g02278 335 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 330 - -
Lsi04g02278 335 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02278 - - - bhj:120086285 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02278 Lsi-Chr4:29808025 Lsi06g00175 Lsi-Chr6:1891625 8.85E-40 dispersed
Lsi03g00706 Lsi-Chr3:9308339 Lsi04g02278 Lsi-Chr4:29808025 8.81E-25 transposed
Lsi01g00807 Lsi-Chr1:6369107 Lsi04g02278 Lsi-Chr4:29808025 5.31E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g508 . Blo12g00731 . Bda03g00457 . Bpe04g00418 Bma04g00432 . . . Cma01g01645 Cma09g00593 . . . Cpe06g00454 . . . . . . . . . . . . . . . Cone6ag1532 . . . Lsi04g02278 Csa03g04491 Chy04g00209 . . . . . . . . . Sed14g1000 Cmo01g01695 Cmo09g00579 . . . Car09g00524 . . Bhi09g02496 Tan01g3850 Cmetu01g2584 . Hepe01g2168 Mch11g0707 . Cla11g01422 Cam11g1478 Cec11g1508 Cco11g1504 Clacu11g1639 Cmu11g1457 Cre11g1875 . . . Cme04g00239
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g02278 . 3 333 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 53.4 4.2e-87 318.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009723 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02278 Lsi_Chr04 FPKM 2.373656 0.0 0.0 0.0 2.419373 3.111766 4.287611 0.397308 1.235223 0.0