Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02279 ATGGAGAATTTGGATGGAAAATCTTCAGATTCTTCACAATGCGTTCGCGTTGCTGTTAATATTAGACCTTTGATTACACCCGAGCTAATGGTTGGATGCACGGATTGTATTACAGTTGTGCCTGGCGAACCTCAGGTTCAAATTGGCTCACATGTATTCACATACGACAATGTGTATGGTAGTGCTGGATCGCCATCTTATGCATTATACGAGGATTGCGTTGCTCCACTAGTTGATGCATTATTTCAGGGTTATAACGCTACTGTTCTTGCTTATGGACAGACGGGGTCTGGAAAGACTTACACAATGGGGACAAATTATAGTGGTGAAGGAAGTAATGATGGTGTAATACCCAAAGTAATGGAAAAAATATTCAAAAAGGTTGAGACAATGAAGGATTCTACAGAGTTCTTGATCAGAGTATCATTTATTGAGATATTTAAGGAAGAAGTCTTTGATTTGCTTGATGCAAGTACTTGCCTTAACACAAAGGGTGAAGGGACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACTATTAATGGTGGAATTACGCTTGTTGGTGTCACTGAGGCAGAAGTTCGCACCACTGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGCCAGTCAAGTCGATCACATGCCATATTTACCATTACCATGGAGCAAAAGAAAAAGCTTGGGCGAGGCATGTCTCATGATGATACATGCGATGACATTCTATGTGCAAAGCTCCACTTGGTAGATCTTGCCGGTTCTGAAAGAGCCAAACGAACAGGTGCCGATGGCATGCGCTTTAAAGAAGGTGTTCATATCAACAAGGGTCTTTTGGCACTCGGCAATGTCATAAGTGCATTGGGAGATGAGAAGAAACGAAGAGAAGGATGTCACGTTCCCTACCGTGATAGCAAGTTAACACGATTCTCTTGGTGGCAACAGCAGAACAGTGATGATTGTCCTGCTGACTCAAATGCTGAGGAGACCTTAAACACGCTAAAATATGCTAATCGTGCTCGCAATATTCAAAATAAAGCAGTTATCAACCGAGATCCTGTAGGAGCTCAAATACAAAAAATGCGAAGTCAAATTGAGCAATTGCAAGCTGAGCTTTTATTCTACCGCGGTGATGCAAGCTTACCATATGAGGAGCTGCAGATTCTAAAGCACAAAATATCATTACTTGAAGCAAGCAATGGAGAGTTGTTGCGGGAGCTTCAAGAACGCCGAGTAACTTGTGATCATCTGTCTCAGCGTGCTATTGATGCTCAGGTTGAAAAAGACAAACTTGCTATGATAATTGAATCCGTGCGGAATGGCCAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGTGAATTGCTCAAGAGTTATGTTTCAAAAATTCAAGAGCTAGAAGGGGAGGTACTGAGATTGCATAGCTCTAAGAGTTTAAAACAAAGTCGATATGTTGATCTCGTGGAGTCTGATGATGATAGGCCCCAACCTAGTAACATCTTATTTCCATCTTCAAATGAGTATTCGTCGGAATATGATCCCAAAGCTGTAGATATTTCAGACATAGTTGGAGTCTGCTACGTCTATGAGTCTGATATGTCAATGAAGGGCTGGTTGGTTTTTGCAGAGGGAATTGAAGATCATGAAAAGGAGCTTGAACATTCAACAATGCAAGAAAGACTAGACAGGGAACTAAAAGAATTGGACAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTGCTGGTACGGATACCTCTGTTCTTAAACAACATTATGAAAAGAAGGTCCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAGAAGCAAGACGCTCAGGCTCAACTATTGAGACAGAAGCAAAAGAGTGACGAGGCAGCAAAGAGATTACAGGATGAGATCCACAGAATTAAGACCCAAAAGGTTCAACTTCAACACAAGATTAAACAGGAATCTGAGCAATTTAGATTATGGAAGGCTTCGAGAGAGAAGGAAGTTCTCCAGGTGGGGGATCAAATGGTCCTGGAATTCAGGAGGTCTAAAATGGCTAAGGAATTGGCCAAACTTAAGGAGGAAGAAGAATTACACAGAGGAGCTAAGTTGAGTGATTGTACTCAAACAATGTCACCTGGTGCAAGAAATTCAAGAATTTTTGCCCTTGAAAACATGCTCGCTACATCATCCAGCTCTTTGGTTTCTATGGCTTCACATTTGTCTGAGGCAGAAGAGCGTGAGCGCATTCTTGGTGGTAGGGGACGTTGGCATCAAGTGCGCTCCCTAGCCGATGCAAAGAATGTTATGAATTTTTTGATGAATTTAGCATCCTCTTCAAGGTGTTTGCTATGGGATAAAGAGTTTGCTTCTAGAGAGAAGGATTCAGAAATTAGAGAATTGAAACAAAAAATAGTGAATCTTAGCGGCATGCTGAAAAAATCAGAAGCGCAAAAGGCAGAACTTATTCATCAGAACTCAGCTTTGAAAAGATATTCCCAGGTTAATAGCGGGGGGCATAACTACGATTTACGCAAGCAGGAGCATCGAAATTCTGTCGTTATACCGGCAGACATGGATACCTCAGAATCAGATTATGCAGATCATAGTTCAGATAGCGAGGATGCTAATTATGATTGGGAGAGATCTATGAAACGACGATTTGATAGAAAAAAAGTCTCTAAAGCTAAGGGTCGTTCAAGTATGGTTGTCTCAAATGGCACAAATAGTACAGAGTTTAACTTGGATAGTTCTGGCGATGGGGGACTTCGTGGGAATGAATCCACTGCTGCTACTACCATTGTTTGTTGTACTTGTAGCAAATCTTCTTCCTGCAAGACAACAAAGTGCCAATGTAGAGCGAATGGTGGTGCTTGTGGCTTGTCATGTGGTTGCATACCATCGAAGTGTTCAAATAGAGGTAGTAAAAGTGACCGGGATGCGACAATGCAACCGACTGTAATCAGGAATGCTCAAAATGCTACAGAAAATGATGAAACCGATGAGGAGAGTCGCGACCTTGTTTCTCATGGTGCAAGGTTGCTTCAGAATGCATTAGCTGAGAGACCAAGTGACGCTCCTCCTGATGAAGACGGTGGCACAAAAAGAAAGCCTCTATCAGACATCGGAAACACATTGACAAACAAGCCGAACCAGAGAAAGAAGTGGCGAAAATCTACAATTCAACTGATTCCAACCCCACAAGCATCTTCCCAAGCAGAAAAACCTGAGGCCACCCAGAAGACTGAGAACGATCCAAATGAGGTTGTCAACGTCCCGTTGAAACTTCCCCGAGCTATGCGATCTGCTGCCGCGAACGGCGGGAACTTACTGAGAGAAAGAAACTCCGATCAGCCGGAAGATTCGGTTGGCGGCAACAAAGAACATGAGCTTATTGTTCCAAAAAGAGTGGATGAGAAAGAGAATTGCAACCGTTAA 3483 42.29 MENLDGKSSDSSQCVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHVFTYDNVYGSAGSPSYALYEDCVAPLVDALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGSNDGVIPKVMEKIFKKVETMKDSTEFLIRVSFIEIFKEEVFDLLDASTCLNTKGEGTKPFAPPRVPIQIRETINGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKLGRGMSHDDTCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRFSWWQQQNSDDCPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDASLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKLAMIIESVRNGQSLDEIESNYDKDCELLKSYVSKIQELEGEVLRLHSSKSLKQSRYVDLVESDDDRPQPSNILFPSSNEYSSEYDPKAVDISDIVGVCYVYESDMSMKGWLVFAEGIEDHEKELEHSTMQERLDRELKELDKKLEQKEAEMKRFAGTDTSVLKQHYEKKVHELEQEKRALQKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRLWKASREKEVLQVGDQMVLEFRRSKMAKELAKLKEEEELHRGAKLSDCTQTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERILGGRGRWHQVRSLADAKNVMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHQNSALKRYSQVNSGGHNYDLRKQEHRNSVVIPADMDTSESDYADHSSDSEDANYDWERSMKRRFDRKKVSKAKGRSSMVVSNGTNSTEFNLDSSGDGGLRGNESTAATTIVCCTCSKSSSCKTTKCQCRANGGACGLSCGCIPSKCSNRGSKSDRDATMQPTVIRNAQNATENDETDEESRDLVSHGARLLQNALAERPSDAPPDEDGGTKRKPLSDIGNTLTNKPNQRKKWRKSTIQLIPTPQASSQAEKPEATQKTENDPNEVVNVPLKLPRAMRSAAANGGNLLRERNSDQPEDSVGGNKEHELIVPKRVDEKENCNR 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29819329 29828868 + Lsi04G022790.1 Lsi04g02279 662328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02279 1160 Coils Coil 813 833 - -
Lsi04g02279 1160 MobiDBLite consensus disorder prediction 1010 1024 - -
Lsi04g02279 1160 ProSitePatterns Kinesin motor domain signature. 259 270 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lsi04g02279 1160 Coils Coil 570 601 - -
Lsi04g02279 1160 MobiDBLite consensus disorder prediction 1072 1102 - -
Lsi04g02279 1160 SMART CXC_2 947 991 IPR033467 -
Lsi04g02279 1160 PRINTS Kinesin heavy chain signature 220 237 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g02279 1160 PRINTS Kinesin heavy chain signature 260 278 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g02279 1160 PRINTS Kinesin heavy chain signature 84 105 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g02279 1160 PRINTS Kinesin heavy chain signature 314 335 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g02279 1160 Gene3D Kinesin motor domain 9 391 IPR036961 -
Lsi04g02279 1160 MobiDBLite consensus disorder prediction 914 934 - -
Lsi04g02279 1160 MobiDBLite consensus disorder prediction 1129 1160 - -
Lsi04g02279 1160 MobiDBLite consensus disorder prediction 988 1160 - -
Lsi04g02279 1160 Pfam Kinesin motor domain 47 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g02279 1160 MobiDBLite consensus disorder prediction 906 934 - -
Lsi04g02279 1160 MobiDBLite consensus disorder prediction 622 646 - -
Lsi04g02279 1160 PANTHER KINESIN-LIKE PROTEIN KIN-4C 623 687 - -
Lsi04g02279 1160 PANTHER KINESIN-LIKE PROTEIN KIN-4C 8 626 - -
Lsi04g02279 1160 PANTHER KINESIN-LIKE PROTEIN KIN-4C 696 1141 - -
Lsi04g02279 1160 CDD KISc_KIF4 14 358 - -
Lsi04g02279 1160 ProSiteProfiles Kinesin motor domain profile. 14 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g02279 1160 Coils Coil 607 672 - -
Lsi04g02279 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 391 IPR027417 -
Lsi04g02279 1160 MobiDBLite consensus disorder prediction 988 1009 - -
Lsi04g02279 1160 SMART kinesin_4 12 365 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi04g02279 1160 Coils Coil 372 392 - -
Lsi04g02279 1160 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 623 687 - -
Lsi04g02279 1160 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 8 626 - -
Lsi04g02279 1160 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 696 1141 - -
Lsi04g02279 1160 Coils Coil 1155 1160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02279 - - - csv:101205410 1604.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02279 Lsi-Chr4:29819329 Lsi03g01877 Lsi-Chr3:30179387 1.22E-57 dispersed
Lsi04g01531 Lsi-Chr4:22910478 Lsi04g02279 Lsi-Chr4:29819329 0 transposed
Lsi04g02279 Lsi-Chr4:29819329 Lsi08g01023 Lsi-Chr8:18793070 2.20E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g515 . . . . Bpe02g00139 . . . . . Cma01g01646 . . . Sed05g1562 . Cpe07g00170 Bhi04g01382 Tan02g2480 Cmetu04g1739 . Hepe10g0431 . Lcy13g1480 . . . . . . . Cone4ag1297 Cone7ag0858 . . Lsi04g02279 Csa03g04492 . . . . Bda11g00799 . . . . . . Cmo01g01696 . . . . . . . . . . . . . . Cla11g01423 Cam11g1479 Cec11g1509 Cco11g1505 Clacu11g1640 Cmu11g1458 Cre11g1876 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02279 Lsi_Chr04 FPKM 4.760447 5.793833 1.297101 1.332845 6.945354 8.625069 8.335904 2.702804 3.610378 3.353876