Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02281 ATGTTGCAGAGAGCTGCTAGTAATGCATATTCATGGTGGTGGGCCAGTCATATCAGGACGAAGCAATCAAAATGGCTCGAACAGAACCTCCACGATATGGAGGAGAAGGTTGATAACATGATGAGAATCATTGAAGGCGATGGAGATTCTTTTGCAAAGAGGGCTGAAATGTATTATAGGAAGAGGCCTGAACTTGTAGAACATGTAGAAGAGTCTTTTCGGGCATATCGAGCTTTAGCAGAGAGATATGATCACCTATCGAAAGAGTTTCAAGGCGCAAATCGGACAATAGCTTCGATCTTTCCTGAACGAGTTCATTACACACTTGATGATGATGACTGTGAAGTTGAGTTTTTTCCTCGAGAATCTTTTTCGACCAAAAGTCCTCACCAGTTTTCAAGTGAATTGGATGACTCACCGAAACTAGGAATCCCAGAAGTTCCAAAGTTTCCTCAAAAGGGTTTTAGAAGTCCTTCAATGATAAGAAGAAAGTCACAACTAAAGAGAAATGCAAGCACTCCTAGAAGTAGAGCTGCTTCAGCTCCAAAATCGGGGCTAAACAAAACTGAAGCACTAGAAGAGATCGATATGCTACAGAAAGAAATTTTGGCTCGACAGACCGAAATGGAATTCGTGAAGAGCTTGTATGAACGTGAGTGTGAGAAATATTGGGATATGGAAAACAGTATCACCAAGATGCAAAAAAGAGTCAACAACTTGCAAGACGAGTTTGGCATTGGCACTATTATTGAAGATAATGAAGCTCGAAAGTTAATGGCAGCAACTGCTCTAAAATCTTGCCGAGAAACTCTGACCAAGTTGCAAGAGGAACAAGAGAAAACAATTGAAGAAACGAGACTAGAGAACAACAGAATCAAGAAAGTGGATACAAAGTTTGAGAGCCTCAAATGTAAGTTCCTTCCAAAGCTAACTGACCATCACGAGTCCATTGATTTACATGAGGATCTAAGCATTGAATCAGGATTGAAAATCTCAGACCAGTTGGTCGCTTGCACAGCAGAAGACAAACATGATATAGAACTCCTTGATCAGAAGATCAGAGAACACCTAGAGATGGATTCAAATAGCTCATTCACCATTTCTGAGTTGGCAGAGAAAATTGATGAACTTGTAAATAAAATTGTGACACTTGAAGCTGCAGTTTCCTCTCAGACATCTCTTATAAGACGGCTAAAATCAGAAACAGATATGCTTCAAGCAAACGTCCAACAATTAGAAGAAGACAAGGAAATTCTTGTGGAAAGTTCAGAGAACATGAAGAAGAAGATAAAGGAATTGGAGATCGAACTCGCCAGAGTGAAAAATCTAAATCAGAATGCAGAAAGTCAAAATATCAACCTTCAAACCCAATTTACTGAAGCAAGTAGTAATCTCGACCACTTATCTGATAAATTGCAAATCATGAAAATGGACGATACTGAAACTTGTGACTTCTCACAAGATGTTATGATGGTCGATCCCGATGTGAAAACAACAACAGTTTCAACAAATTCAGGATTTGAGGGGAGGAAAGTAGAAACTTTGAAAATCGGTGATTTTTTCATGGATGAGGAACAGAAACAATGCATTTCAAGTAATAAAAATCTTATTCTTGAAATAGAAACGACAAAGGAATCAGGGCACGAAGAAAATGATGATACACCACAACTTCAAACAGAAAATACTCTTCTTGATTTGGAGGCAAATGAATTGCAAGAGGAAGAAAAGCGTCCCACCTTGAGGCAACTTTTCTTGAAAGGAATAGAAGATAGAGAAAAAGTTCTACTGGAGGAGTATACTTCAGTTTTAAGAGACTATAAAGATGTAAGAAACAAGTTAAGTGAAGTTGAACAAAAGAATCGTGATAGCATTTTCGAATTGGCAATGCAAGTTAAAGAACTGAAAGATGCCATTTCCTCTAAAGACGATGTGATAAAATCATTAGTAAATAATGGCGAAACAGATGAAGAAGCAAACACGAGAGATGTGGACCAGGAACTACCACAAGAAAGCATTCATGAGGCTCCTAGCTATTTATACTCTGAATCCTCAACTCCATATATAGATCAAGTTTCGATTCCCGACTCTTATGGCGAACGAAGTATTGAGCGCATAGAAGGAAGCTACAGAACAATGAGGAATGCAAGAAGCTTGACGAAGAAAGATGATGTAAACAAGAAATCGATTGGGGGTGATAAAGTCATTACCATGTCACCTACAGAAGAAAGATTCCGCTCCCACATTGATGGACAACTAGAGATGAATCTCGAGTTTTGGCTGCGATTTAGCACAACCGTCCACCAGATTCAAAAATTCCAGACTTCAATCCAGGATCTGCAATCAGAGCTGCAAAAGTTGAGAGAAAACAAGCAGCAAGAAGGAAGTGTGAAACATCAACAAGCAATGGAATCCGATGCTCGGCCAATATACACACACTTGAGAGAGATACAAACCGAATTATCACTTTGGTTGGAACATAGTGCAGTATTGAAAGATGAACTAGGCAATAGATTCTCATCCTTATGTGACATACAAAGCGAAATATCAAGAATCACAGATGAAGGTTCAGCTGAAGAAAAGACAGAACTAAGTGATTATCAAGCCGCAAAGTTTCAAGGTGAAGTACTCAACATGAAGCAAGAAAATAGGAAGATAGCCGATGAGTTACAAGTCGGTCAGGGTCGGGTAAGAGTACTACAAGTTCAAGTTGAGAAGGCTTTGGAGAGACTTGATCAAGAATTTGGTATTTCAGCAGGCAAGAGCATGCAACAATCGAAATCGTTGAGCCGAACACGAATTCCTTTACGGTCTTTCTTGTTTGGCGTTAAGTTAAAGAGGCAGAAGCCATCGCTCTTCTCATGTGCGAGTCCACAACTACAGAAACAATATAGTGATGTAGCTAAAGGTCCCGTACCCCAGTGA 2922 39.43 MLQRAASNAYSWWWASHIRTKQSKWLEQNLHDMEEKVDNMMRIIEGDGDSFAKRAEMYYRKRPELVEHVEESFRAYRALAERYDHLSKEFQGANRTIASIFPERVHYTLDDDDCEVEFFPRESFSTKSPHQFSSELDDSPKLGIPEVPKFPQKGFRSPSMIRRKSQLKRNASTPRSRAASAPKSGLNKTEALEEIDMLQKEILARQTEMEFVKSLYERECEKYWDMENSITKMQKRVNNLQDEFGIGTIIEDNEARKLMAATALKSCRETLTKLQEEQEKTIEETRLENNRIKKVDTKFESLKCKFLPKLTDHHESIDLHEDLSIESGLKISDQLVACTAEDKHDIELLDQKIREHLEMDSNSSFTISELAEKIDELVNKIVTLEAAVSSQTSLIRRLKSETDMLQANVQQLEEDKEILVESSENMKKKIKELEIELARVKNLNQNAESQNINLQTQFTEASSNLDHLSDKLQIMKMDDTETCDFSQDVMMVDPDVKTTTVSTNSGFEGRKVETLKIGDFFMDEEQKQCISSNKNLILEIETTKESGHEENDDTPQLQTENTLLDLEANELQEEEKRPTLRQLFLKGIEDREKVLLEEYTSVLRDYKDVRNKLSEVEQKNRDSIFELAMQVKELKDAISSKDDVIKSLVNNGETDEEANTRDVDQELPQESIHEAPSYLYSESSTPYIDQVSIPDSYGERSIERIEGSYRTMRNARSLTKKDDVNKKSIGGDKVITMSPTEERFRSHIDGQLEMNLEFWLRFSTTVHQIQKFQTSIQDLQSELQKLRENKQQEGSVKHQQAMESDARPIYTHLREIQTELSLWLEHSAVLKDELGNRFSSLCDIQSEISRITDEGSAEEKTELSDYQAAKFQGEVLNMKQENRKIADELQVGQGRVRVLQVQVEKALERLDQEFGISAGKSMQQSKSLSRTRIPLRSFLFGVKLKRQKPSLFSCASPQLQKQYSDVAKGPVPQ 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29838692 29842438 + Lsi04G022810.1 Lsi04g02281 662330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02281 973 Coils Coil 264 295 - -
Lsi04g02281 973 PANTHER PROTEIN NETWORKED 2D 1 965 - -
Lsi04g02281 973 Coils Coil 367 387 - -
Lsi04g02281 973 MobiDBLite consensus disorder prediction 125 186 - -
Lsi04g02281 973 Coils Coil 557 577 - -
Lsi04g02281 973 PANTHER PROTEIN NETWORKED 2A 1 965 - -
Lsi04g02281 973 Coils Coil 223 243 - -
Lsi04g02281 973 MobiDBLite consensus disorder prediction 164 183 - -
Lsi04g02281 973 MobiDBLite consensus disorder prediction 650 669 - -
Lsi04g02281 973 Pfam KIP1-like protein 11 84 IPR011684 GO:0003779
Lsi04g02281 973 MobiDBLite consensus disorder prediction 655 669 - -
Lsi04g02281 973 Coils Coil 599 619 - -
Lsi04g02281 973 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Lsi04g02281 973 Coils Coil 395 464 - -
Lsi04g02281 973 Coils Coil 769 796 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02281 - - - csv:101205249 1606.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02263 Lsi-Chr2:29191813 Lsi04g02281 Lsi-Chr4:29838692 3.19E-33 dispersed
Lsi04g02281 Lsi-Chr4:29838692 Lsi05g00780 Lsi-Chr5:11168836 9.12E-85 dispersed
Lsi04g02281 Lsi-Chr4:29838692 Lsi05g00949 Lsi-Chr5:16618508 3.17E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g520 . . . Bda03g00455 Bpe02g00141 . . Bma01g02583 . . Cma01g01647 Cma09g00594 . . . Cpe06g00455 . . . . . . . . . . . . . . . . . . . Lsi04g02281 Csa03g04495 Chy04g00206 . . . . . . . . . Sed05g1559 Cmo01g01699 Cmo09g00580 . . . Car09g00525 . . Bhi09g02499 Tan01g3853 Cmetu04g1542 . Hepe01g2171 Mch11g0710 . Cla11g01426 Cam11g1481 Cec11g1511 Cco11g1507 Clacu11g1642 Cmu11g1460 Cre11g1878 . . . Cme04g00236
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007068 1 1 1 1 1 0 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 3 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02281 Lsi_Chr04 FPKM 1.500968 2.546578 1.934484 1.933833 2.190395 1.720371 2.137786 2.142135 1.891183 2.870438