Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02282 ATGGACGGCGGTAAAAACAATACTCTAATTTCCGAGTTAAAATTTTCGTCGGTGGTTCCGGCAAAGGCGACCGGAGACGACAAGGTCCGGGAACTGACGGCGATCGATCTGGCGATGAAGCTTCATTACATAAGAGGCGTTTATTTCTTCAAAGGGAGCGAAGAGGTGAGAAATTTGACGATTTATGACCTAAAAAAACCTTTGTTCTCGTTGTTGGAGCAATACTACGTCGTTTCGGGGAGGATTCGAAGGAGAATCGAAGATGGAGATCGGGCGTTCATTAAGTGTAATGATAGTGGAGTGAGAATTGTGGAAGCAGATTGTGAGAAAAGTATTGATGAATGGCTTTCGATTGAGGGAGATGATAAATTTTCGCATCGCGATGGCTGCTTGGTTCCTACTCAAGCCATTGGTCCTGATCTTGGATTCTCCCCTCTTGCTTTCATCCAGCTGACTCGGTTCAAGTGCGGCGGACTCTCCGTGGGCATTAGTTGGACTCACGTTCTCGGCGATATCTTCTCCGCCTCCACCTTCATCAACGCATGGGGTTACATCACGAACGACCGCCCGGCCAACCAACTCCGTCCGGCGCAGGCTGGCCTTATTTGGCCGTCCAGATCAACCAAACTGTCCACACCGCCGGTCAAGAGGCTCGACCCGACCGGAGACCTCTGGATCGGGTCAATCGACTGCAAAATGGCGACGCGGTCATTTCGAATCAAGGCGGAGCAATTGGATCGAATCTTGAGCGTTGTCGGCCGGAATCGAGCGGTGAACTTCTCAACTTTCGAAGCTATTGCTGCGATTTTCTGGAAATCTCTGGCGAAAATACGGCTTGAGGACTCGGATTCGAGGACGATCTCGATCTATTCGACGAAATGCCCTAACAGAGAGGGTGAAATTCCGAGGAACGGAATGGAGATGAGCGGCGTCGAGGCCGATTTTCCTGTCGATGAAGCGGCGGAAGGTGAATTAGCGGAGCTGATTGTGAAGAAGAAAATTGATGAGGGCGGAGAAATCGAGGAAATGGTGGAGAAAGAAAAGGAGGAATCAGACTTCATAGCATACGGAGCGAGATTGACGTTTGTTGATTTGGAAGAAGCGAATATTTACGGCTTCGAATTGGAAGGGCAGAGGCCAATTCATGTGAATTATGAGATTGGGGGAGTTGGTGAAAACGGCGTCGTTTTGGTACTCACTGGACCGCTGCGTGGCGACGGAAAAGACGGCGGTGGCCGAACGGTGACGGTTATCTTGCCGGAGAAACAGCTGCCGGACCTTATCGATGAACTGCAGAAGCAGTGGGAGATCGCAAAGATTCAGTCGGTTTGCACTTGCAGTGAGCTGCACTTCTGTGCCTGCGTGTCTATCATTGAGCAGTGCACTCTCACCACCGTCGCCGATAAGTCCGGATTTCTTTTGCAACCGCAACGCTTAACATTCGTTTTCCGGTTTCGTCTTCAAACAATTTCCGAGAAGCGATTTCAGTCTCATCGGCGACGGTCACCGACGCTGCACCTATATTCGGTAAGAGCAATTTTTACTTTGCTTCGAGAGGTGGCCCGGGTTTCGGGAGTGAGAATTGATTGGGACAAATTGGTGAAGAACACGTCCACTGGGATTTCTAATGTTTGGGAGTATCAGTTGTTATGGCGGCATTTGCCTTATCGTCACACGTTACTGGAGAACATGGATTCTGTTACTGATCCACTGGATTATGATAGTGACTTAGATTTTGAAATAGAACCTTTTCCATTTGTCAGCAGTGAGTCCTTGAATGAAGCTGCAGCATGTGTAAAGGTACTGATTGCTAATTGCATACCAACTGAGTCAGATGTTCCAAGTAGTTCTGCAGTTGAGGCCCCATTGACTATAGGTATATCCAATAGTCAAGCATCTACAGACAATCTTGAAAATCCTCAATCTGCTTGTTTGATGCAAGGGATGTCTGTTACAATTCCACTTTCCATTCAGAGACAGCCGATTCCATTGCCAGTAGCAACTGAAGTATTTGATGTGAATGGAGCAGCTGGTGCTAATGCAGCTTCTCGAAAAAGAAAAAAACCTTGGTCGAAGGCAGAGGATTTGGAATTGATGGCTGCTGTGGAGAAGTGTGGTGAAGGAAACTGGGGGAATATCTTGAAAGGAGACTTCAAGGGGGATAGAACTGCTTCACAGCTATCTCAGAATGTGGGAGCTAGCACCACAAGTACTACCCAGAAAGCTCAGATTGATGCTGCACACCGTGCATTGTCCTTTGCCCTTGATTTGCCTGTGAATAACTCAAAAACAGCAAATTCAAACATAAACAGTAGCATTGTTTCTTCTGCAAGTGGTGCCGAAGCTTCAGTTCAAATGCAGAATCAGTCTCCACATATTTCCATTCCTTCAAGGCCGCTGCTGGTAGAGCCTTTGCCTTCAGCAGTGAAATCTGGGATCAACACTTCCAAAAATTCATTGATGATGAAGTCTACTCACAATTCTGATTCTATAGTTAGAGCAACTGCAGTAGCTGCAGGGGCCCGAATCGTTTCTCCGTCTGATACTGTATCTCTACTGAAAGCGACGCAAACGAGAAATGCCATCCGCATAAAGTCCAAATGTGTTTCATCAATCCAATCACCCGTGGTTGGGAATGCACCAATGCACTTGGATGCACGCCCCAGTGTACATTATATTTCCACAGGAAAAACACCAACTCCAGGCTCAAACTATGTGAGTGGTAAATCTACTATGGTAGGCAATAACTCAATGAAGGCTGTCTCACCAAAAGTTCTGCATAATCGTTGTACTGCTATTTTGACAAACCCGCCATCAGACCGAGTAAGCCCAACAACTGAGTCTCCATTGAAGCAAGAGGTTAACAGTTCAGAAGAACGCAAAATTGCCAAGCCAATCATTACTGCAAAAGAGGAGTTTCGAGAAAACAGCGTGGCAAATGATGTCAAGATTAGGGGCTGA 2961 47.11 MDGGKNNTLISELKFSSVVPAKATGDDKVRELTAIDLAMKLHYIRGVYFFKGSEEVRNLTIYDLKKPLFSLLEQYYVVSGRIRRRIEDGDRAFIKCNDSGVRIVEADCEKSIDEWLSIEGDDKFSHRDGCLVPTQAIGPDLGFSPLAFIQLTRFKCGGLSVGISWTHVLGDIFSASTFINAWGYITNDRPANQLRPAQAGLIWPSRSTKLSTPPVKRLDPTGDLWIGSIDCKMATRSFRIKAEQLDRILSVVGRNRAVNFSTFEAIAAIFWKSLAKIRLEDSDSRTISIYSTKCPNREGEIPRNGMEMSGVEADFPVDEAAEGELAELIVKKKIDEGGEIEEMVEKEKEESDFIAYGARLTFVDLEEANIYGFELEGQRPIHVNYEIGGVGENGVVLVLTGPLRGDGKDGGGRTVTVILPEKQLPDLIDELQKQWEIAKIQSVCTCSELHFCACVSIIEQCTLTTVADKSGFLLQPQRLTFVFRFRLQTISEKRFQSHRRRSPTLHLYSVRAIFTLLREVARVSGVRIDWDKLVKNTSTGISNVWEYQLLWRHLPYRHTLLENMDSVTDPLDYDSDLDFEIEPFPFVSSESLNEAAACVKVLIANCIPTESDVPSSSAVEAPLTIGISNSQASTDNLENPQSACLMQGMSVTIPLSIQRQPIPLPVATEVFDVNGAAGANAASRKRKKPWSKAEDLELMAAVEKCGEGNWGNILKGDFKGDRTASQLSQNVGASTTSTTQKAQIDAAHRALSFALDLPVNNSKTANSNINSSIVSSASGAEASVQMQNQSPHISIPSRPLLVEPLPSAVKSGINTSKNSLMMKSTHNSDSIVRATAVAAGARIVSPSDTVSLLKATQTRNAIRIKSKCVSSIQSPVVGNAPMHLDARPSVHYISTGKTPTPGSNYVSGKSTMVGNNSMKAVSPKVLHNRCTAILTNPPSDRVSPTTESPLKQEVNSSEERKIAKPIITAKEEFRENSVANDVKIRG 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29842122 29858004 - Lsi04G022820.1 Lsi04g02282 662331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02282 986 ProSiteProfiles Myb-like domain profile. 682 726 IPR001005 -
Lsi04g02282 986 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 502 979 - -
Lsi04g02282 986 SUPERFAMILY Homeodomain-like 684 728 IPR009057 -
Lsi04g02282 986 CDD SANT_TRF 688 729 - -
Lsi04g02282 986 Gene3D - 8 215 IPR023213 -
Lsi04g02282 986 MobiDBLite consensus disorder prediction 935 962 - -
Lsi04g02282 986 Pfam Transferase family 17 289 - -
Lsi04g02282 986 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 682 715 IPR017930 -
Lsi04g02282 986 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 502 979 - -
Lsi04g02282 986 MobiDBLite consensus disorder prediction 935 952 - -
Lsi04g02282 986 Gene3D - 230 429 IPR023213 -
Lsi04g02282 986 Gene3D - 679 735 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02282 - - - cmo:103503656 737.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02282 Lsi-Chr4:29842122 Lsi11g00455 Lsi-Chr11:4756407 4.51E-19 dispersed
Lsi02g01745 Lsi-Chr2:23131553 Lsi04g02282 Lsi-Chr4:29842122 6.26E-06 transposed
Lsi09g01123 Lsi-Chr9:18035250 Lsi04g02282 Lsi-Chr4:29842122 1.21E-81 transposed
Lsi04g02282 Lsi-Chr4:29842122 Lsi08g01020 Lsi-Chr8:18763916 1.81E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g523 . . . Bda03g00453 . Bpe04g00416 Bma04g00429 . . . Cma01g01476 . . . . . . . . . . . . . . . . . . . . . Cone7ag0861 . . Lsi04g02282 Csa03g04496 Chy04g00203 . . . Bda11g00803 . . . . . Sed13g1533 Cmo01g01531 . . . . . . Cpe02g00477 Bhi09g02503 Tan01g3855 Cmetu04g0115 . Hepe01g2172 Mch11g0712 . . . . . . . . . . . Cme04g00234
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010250 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02282 Lsi_Chr04 FPKM 8.161799 9.482931 8.531088 9.043875 15.226025 13.608384 14.614285 2.842613 2.838148 3.133556