Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02283 ATGGCAAGGCCCGGCCCAAATGGTTCGTTCAACGTTTCTTCTGCTCGCGGAGGCGCAGATTTTGATCCTTTCGAACCATACTGTAGTTCACCGGAAATGCACGGACGGCCGCGCAAGCCTCAGAAGCCGGAGGAAGAAGAAGCTTCGGCGGTGGAAGCCGCGAAGCTTCGAAATCTGCAATCTCAATTGCTCGCAAATCACCACCAAAAGAACTATTCGAAGGAAGCTCTAATGGTCAGTGCTAATTTGCTGGAAATGAATCCGGATCTGTATACGGCTTGGAACTATAGGAAACTTGCGGTTGAACACTACTTGAAGGAATCTCCATCAGACATAAAGTCAATCAAAGCGATTCTCAACGAGGAACTTAGAGTAGCTGAAAGTGCACTACGTCAGAACGTCAAGTCGTACGGCGCGTGGTATCATCGAAAATGGATTTTGAGCAAGGGGCATTCCTCCGCCGATCATGAGTTGCGACTGCTTGGAAAGTTTCAGAAACTCGACGCTAGGAATTTTCATGCATGGAACTACAGAAGATTTGTGGCAGGGCTAATGAACATATCAGAGGAGAAAGAATTGAAGTATACAACAGATATGATAGATACAAATTTTAGCAATTATTCAGCATGGCATAACCGCAGTGCGCTTCTTGCCAAATTGCTGAACAAAAAGGCTGAAGGTTATTTCCCAGTGGAAAAGGTGTTAAATGATGAGTATGAGCTTGTGCACCAAGCTATTTTCACTGATCCGGATGATCAAAGTGGCTGGTTTTATCATCTTTGGCTTCTAGACCAAACAGTGAAAACAAATCCGCCAAGTCTTGTTTCTTCTTGGCCACCTCATAGTTTTAATGTGGCATTATCAAGAACTGGATGTCTAAATGATCGCACTCTCTCTTCATTTAGTCATTTCCATTCTGATTCAGGAACAATACCCCTCATTCTTTACTTTGATCAACCTGTTCAAGGAGTTGACTCATCTTCAGTTATTGTTAAATCTACAGCTAATTTAAGAGATCTTATTTGGAAACCACTCTCAAAAGGTAACCGTGCTGCTGCCAAAGCTTGGGTTAGTCGTTTGACTTTTCCTCAAGAAGAGCTCAATTCTGAATTTTATTCGGTGGAAGTCAGCATTGGACATTCTCAGAAAATAGCATCTGCAACTGGTTTTCATCATGTGAGACCAACTCATTTTTCGTTTAAAGTGGCTGTGAATTTAGGAGAAACACCGACTGAAGATTGTGGTAACGAAGGGATCAGGTGGAAGGATGAAAACTTTACCAGTTGCGGAATTAGTCTTCAGAATTTTCCATTTGTTTCTTCCGACAATCCAACCAGCGAGGATAATTATGCACCTTCTACTTCTGAATGGTGTGCCGAGACTATAAGTAATGAAATAGCTCTGTTCCGAGAATTATTATCAGAGACCGATTGTAAAATTGGAAAGCTCACTCTTGCCAGATTGTTGATGGCTCATGCTGCAACATCTCCACATGTCAATAAAATGGTCCAACTTGAGGAAGTTCTGGACCTTTACCAAGACCTGATGAAAGTGGCTGACATTCTGGTTTCTTCACAGCTGACATATACTAGGGAGTCTTTGTTAAGACACTGCTATTCCTACAATGACCAGACATCACCATATATTGATAGTACTACCTGTCTACGGCTCAATAATTTATCAATTTCACGGATTGAATCTGTAGAAAAACTACTGTGGGTGCAAGTGCTGGACCTCAGCCACAATGAACTTCAATCAATTGAAGGATTGGAGGGCATGCAGCTCCTCTCTTGCTTGAGTTTGAGTAACAATAAAATCGGCAATTTTACTACGTTGGAGCCTCTGAGACTGTCAAAGTCTTTAAAAGTTTTGGATATATCATACAACGAGATAGGTTCCCATTCTATCGACACAACCAGATATCTCTTCTCATCTCCCCTGTCTCATTCTGAAGAAAATGATTTGAGCAGTGATGAATTGGCAATTGATTGTACCGATCTGGCAAGTTACTGGGAAGCTTATTTTCTATTCAAAGATCTAAGCTTGACGCAATTGGATATTGAAGGAAACGTGATATCTAGTGAAAGGTTTAAAGCATTTCTGGTAAAGATTCTTCCCAAACTCCACTGGCTTGATGGAAAACAAGTACAATAG 2154 41.6 MARPGPNGSFNVSSARGGADFDPFEPYCSSPEMHGRPRKPQKPEEEEASAVEAAKLRNLQSQLLANHHQKNYSKEALMVSANLLEMNPDLYTAWNYRKLAVEHYLKESPSDIKSIKAILNEELRVAESALRQNVKSYGAWYHRKWILSKGHSSADHELRLLGKFQKLDARNFHAWNYRRFVAGLMNISEEKELKYTTDMIDTNFSNYSAWHNRSALLAKLLNKKAEGYFPVEKVLNDEYELVHQAIFTDPDDQSGWFYHLWLLDQTVKTNPPSLVSSWPPHSFNVALSRTGCLNDRTLSSFSHFHSDSGTIPLILYFDQPVQGVDSSSVIVKSTANLRDLIWKPLSKGNRAAAKAWVSRLTFPQEELNSEFYSVEVSIGHSQKIASATGFHHVRPTHFSFKVAVNLGETPTEDCGNEGIRWKDENFTSCGISLQNFPFVSSDNPTSEDNYAPSTSEWCAETISNEIALFRELLSETDCKIGKLTLARLLMAHAATSPHVNKMVQLEEVLDLYQDLMKVADILVSSQLTYTRESLLRHCYSYNDQTSPYIDSTTCLRLNNLSISRIESVEKLLWVQVLDLSHNELQSIEGLEGMQLLSCLSLSNNKIGNFTTLEPLRLSKSLKVLDISYNEIGSHSIDTTRYLFSSPLSHSEENDLSSDELAIDCTDLASYWEAYFLFKDLSLTQLDIEGNVISSERFKAFLVKILPKLHWLDGKQVQ 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29864537 29869980 + Lsi04G022830.1 Lsi04g02283 662332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02283 717 Pfam Leucine Rich repeat 619 632 IPR001611 GO:0005515
Lsi04g02283 717 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 153 187 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 SUPERFAMILY L domain-like 551 632 - -
Lsi04g02283 717 MobiDBLite consensus disorder prediction 1 48 - -
Lsi04g02283 717 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 118 152 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 ProSiteProfiles Leucine-rich repeat profile. 595 616 IPR001611 GO:0005515
Lsi04g02283 717 Gene3D Protein prenylyltransferase 32 278 - -
Lsi04g02283 717 ProSiteProfiles Leucine-rich repeat profile. 573 594 IPR001611 GO:0005515
Lsi04g02283 717 Pfam Protein prenyltransferase alpha subunit repeat 155 181 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 Pfam Protein prenyltransferase alpha subunit repeat 236 265 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 Pfam Protein prenyltransferase alpha subunit repeat 190 219 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 Pfam Protein prenyltransferase alpha subunit repeat 74 103 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 Pfam Protein prenyltransferase alpha subunit repeat 119 149 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 Pfam Leucine Rich repeats (2 copies) 575 613 IPR025875 -
Lsi04g02283 717 PANTHER - 33 626 - -
Lsi04g02283 717 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 72 106 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 234 268 IPR002088 GO:0008318|GO:0018342
Lsi04g02283 717 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 33 626 - -
Lsi04g02283 717 Gene3D Ribonuclease Inhibitor 534 717 IPR032675 -
Lsi04g02283 717 SUPERFAMILY Protein prenylyltransferase 34 519 - -
Lsi04g02283 717 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 188 222 IPR002088 GO:0008318|GO:0018342
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02283 K14050 RABGGTA; geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60] - csv:101216457 1181.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02283 Lsi-Chr4:29864537 Lsi07g00041 Lsi-Chr7:480151 6.82E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag0863 . . Lsi04g02283 . . . . . . . . . . . . . . . . . . . Cpe02g00478 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005438 1 5 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02283 Lsi_Chr04 FPKM 0.578871 0.434361 0.0 0.0 0.0 0.675799 0.390579 0.0 0.0 0.0