Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02284 ATGCCGCATAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACCTCCAAACACATTTTGGATCACGAGAAGAAAATCAACAATGACACTTTTAGTACCGAAAGCGACGCGAAACCGACCCCGAGGCCAGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCTCAAAGCAATAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACGCGATCGGCTTCAGCTCACGTGAAAACTTGGCTTTCCAACTGCGACGAGGACCGCGAGCTTTTGCTTCCGCCACCTACCTCGGAGCCGGAGCATGATACAGCGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCATTGCCTAGAGTATCAAGCGGGAGTAGCTATGCGGGGAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGACGTCAAGGATTCATCGGCGTCAAAGATATTGTCCTCGCATGCGGCGAGGCCGGAAGAGGTTGAGGTTGGAGATGGTAAAGAAAGCATAGCACAGAGAGCGAAAGAGAGTTATTACCTGCAACTTGCGTTGGCTGCAACGCTTCGTTCCCATGCTAGTCTCGCTGGCGATCCTGTGCTCATGGAGGAATGCAGGGTGGAAATTACGGACGCTGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGCCTGTCTTACTCCGACAAAATATCAGATGGTTTCTACAATATTCTGGGTATGAACCCGTATCTCTGGGTTATGTGCAATGGTTTTGAGGAAGGTAGACGGCTACCTCCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTGGATAGACGTGGGGACTCTCGACTGAAAGAGCTTGAAGACAAAGCACAGGAACTATATTGTGCTTCAGAGAGCACCTTAGTGTTGGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGCACTTTTCCGGTGGAGCAAGGGGGGTTGCACCTTCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAAATGCATAGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCACCGTGCAATCCTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATCGAAGATGGCAAGAAATCACTGAGGGAATATGTAGTTGATTTAGTGGGGGAACCGGGAAATATACATGGTCCAGATTCCTCAATTAATGGAGGGTTCCAATCATCAATGCCTTCACCGCTCCACATTTCTCATTTAAAAGAGTTTCAAGAACCTTACGTGGAAAGTTATTTCAATCTTCAAACTGTTGGGTCAAAGCAAATCTGTGGATTTCCTGAAAATCCTCTACGTTCAGGTTTTGGAGAGTACCAGATGAAAGGGGGAAGCACTTTACATAGGTGTTCAGGGGCTGAAACTGATAAATTGGTTGATCAAGCTTGTATGGGTATGAGATCAACTCAGTTGTGTGTGGAGACAAAAGTGAGCAAGGAGTGTGTGCTTCAGAGTCATATAATGCCATCCACTGGCGCCGATGCCTCCGAGGTGTTGAGTTCTGTTGGTGGTGCATCTTTATGTGAAAACAAAGTTGTCATTGAAGAAATATACCAAGAAGAGGAAGTTGTGGCGGGGATTTCACTGGATGAAACTAGCATTAATCCGTCCAAATTAAGCTTGTCAACTCAAACTGATTCAAAGGAGGTTGAGGGTAGGTCTCAAAGTTGTTCGGCATCAACATATCCGAATTATTTGACACTTGAACCGTCACTTGCAATGGATTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTTGGAGCTGGCTCATTTGGTACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACTGTGCAGGATTTCCATGATGATCAGTTGAAAGAGTTTCTAAGAGAGGTTGCAATAATGAAGCGGGTGCGCCATCCGAATGTGGTACTCTTTATGGGTGCAGTTACAAAGCGACCTCATCTTTCAATAGTGACTGAATATCTGCCCAGGGGTAGTCTATACCGTCTAATCCACAGGCCATCTTCGGGTGAATTGATGGATCAAAGGAAACGGTTGCGCATGGCGTTGGATGTGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCATCGAAATCTGTTGCTGGAACGCCTGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCTAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAACTAGTAACCATGCAACAACCATGGAGTGGGCTTGGCCCGGCTCAGGTTGTGGGAGCTGTCGCTTTCCAGAATAGAAAGCTTTCTATCCCATCAAGTACTTCTCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTTGCAAGCATAGTTGAGTCCCTAAAGAAATTGCTCAAATCTCCACAGCAGTTGATAGCCATGGGCGGAACGTGA 2679 46.73 MPHRTTYFFPRQFPDRGFDSASTSKHILDHEKKINNDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSASAHVKTWLSNCDEDRELLLPPPTSEPEHDTASVKDRSVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHAARPEEVEVGDGKESIAQRAKESYYLQLALAATLRSHASLAGDPVLMEECRVEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNGFEEGRRLPPLMSLRTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASESTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDGKKSLREYVVDLVGEPGNIHGPDSSINGGFQSSMPSPLHISHLKEFQEPYVESYFNLQTVGSKQICGFPENPLRSGFGEYQMKGGSTLHRCSGAETDKLVDQACMGMRSTQLCVETKVSKECVLQSHIMPSTGADASEVLSSVGGASLCENKVVIEEIYQEEEVVAGISLDETSINPSKLSLSTQTDSKEVEGRSQSCSASTYPNYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPSSTSPLLASLIESCWADDPVQRPSFASIVESLKKLLKSPQQLIAMGGT 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29872057 29881612 - Lsi04G022840.1 Lsi04g02284 662333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02284 892 MobiDBLite consensus disorder prediction 30 57 - -
Lsi04g02284 892 Gene3D Transferase(Phosphotransferase) domain 1 749 888 - -
Lsi04g02284 892 ProSiteProfiles Protein kinase domain profile. 655 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02284 892 CDD STKc_MAP3K-like 661 876 - -
Lsi04g02284 892 SUPERFAMILY Protein kinase-like (PK-like) 628 875 IPR011009 -
Lsi04g02284 892 ProSitePatterns Protein kinases ATP-binding region signature. 661 682 IPR017441 GO:0005524
Lsi04g02284 892 Gene3D Phosphorylase Kinase; domain 1 648 732 - -
Lsi04g02284 892 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Lsi04g02284 892 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 108 762 - -
Lsi04g02284 892 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 763 890 - -
Lsi04g02284 892 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 108 762 - -
Lsi04g02284 892 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 763 890 - -
Lsi04g02284 892 MobiDBLite consensus disorder prediction 110 134 - -
Lsi04g02284 892 Pfam Protein tyrosine and serine/threonine kinase 763 876 IPR001245 GO:0004672|GO:0006468
Lsi04g02284 892 Pfam Protein tyrosine and serine/threonine kinase 655 762 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01941 Lsi-Chr3:30804861 Lsi04g02284 Lsi-Chr4:29872057 1.53E-64 dispersed
Lsi04g02284 Lsi-Chr4:29872057 Lsi07g01075 Lsi-Chr7:16102866 1.69E-50 dispersed
Lsi06g00200 Lsi-Chr6:2196603 Lsi04g02284 Lsi-Chr4:29872057 3.41E-10 dispersed
Lsi10g01592 Lsi-Chr10:20410574 Lsi04g02284 Lsi-Chr4:29872057 5.44E-35 dispersed
Lsi04g02284 Lsi-Chr4:29872057 Lsi01g01250 Lsi-Chr1:10677564 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83616 PF14381 EDR1 1.20E-75 CL0125 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02284 - - csv:101204522 1670.21