Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02288 ATGGCAACATTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGATAAGTCCATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGACTATCAAGTGCGCGTCTAGCCTTGAGCCAAATTGTTTTGTCAGTAACACATGTATATGTCGAATGAATAGTGGAATCTTCCCCCGGGGTCTTTTGGTTGCCACGAAGTGA 282 45.74 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKCASSLEPNCFVSNTCICRMNSGIFPRGLLVATK 93
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30011702 30012568 - Lsi04G022880.1 Lsi04g02288 662337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02288 93 CDD TFIIA_gamma_N 4 49 IPR015872 GO:0005672|GO:0006367
Lsi04g02288 93 Gene3D - 3 54 IPR009083 GO:0005672|GO:0006367
Lsi04g02288 93 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Lsi04g02288 93 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Lsi04g02288 93 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 62 - -
Lsi04g02288 93 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 62 IPR003194 GO:0005672|GO:0006367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02288 K03123 TFIIA2, GTF2A2, TOA2; transcription initiation factor TFIIA small subunit - vvi:100242052 117.087
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g543 . . Bda01g00904 . Bpe02g00487 . . . . . Cma01g01469 Cma09g00597 . . . Cpe06g00458 . . . . . . . . . . . . . . . Cone4ag1285 Cone7ag0868 . . Lsi04g02288 . . . . . . . Bpe02g01142 . . Bma02g00119 Sed05g1552 Cmo01g01525 Cmo09g00584 . . . Car09g00529 . Cpe02g00483 Bhi09g02516 Tan01g3866 Cmetu03g1161 . Hepe01g2179 Mch11g0718 . Cla11g01436 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004386 2 7 0 1 1 0 2 0 1 2 0 1 0 1 2 1 1 2 2 1 2 1 1 1 1 1 1 2 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02288 Lsi_Chr04 FPKM 7.450828 8.470218 2.039734 3.045239 1.165036 0.769789 1.326818 0.0 0.412478 0.558744