Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g02289 | ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCCTCTTCTCTTCTTTTTTCTTTTACTTTCACGCGCCCTTCATCTCTGCAACAACAACAATACCACAGCCTCCTCGTCAATTTTCTTCTTCATGGCCGCCGGAGAACTTCCACCACGCTGTCTCGATGGCCGCCGCCGCCGGACACGACCCCGACCCCGCGGCACCTCCTCCGTTGCAACTAAGGATTTACGACCAACATGTTGTGATGGACAACGGCATAATCGGAGTTAACTTGTCGAATCCAAATGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATAGAACTCTCATTCAGCAGAACCTACAATTCATCTATCGGAGGTGACCTCATTCCCTTAAACATCGACAAAAGGTTTGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCTATTTACGAACACTTGAAAGAATGGCCTGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGACGATCGGAAGCCACCGCGAGGGGAAGCCCTAGCTTATCCGGAGGCCGTTCTTCTTGTCGATCCTGTAGAACCAGAGCTCAAGGGGGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGATGCTCGGGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCGCAGCCACCGAGGAGTTTCGCTCCGGTGGACCCCTCAAACAGTTTCTCACCTCCCATGTGGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTATAAAGTTCGGAAGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTACACTCTGGGATAATGCTAAAAAACAGATGATGGTCGAAGTTCAAAGCTGGCCTTACGGTTTCCCTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATGCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACGAGAGCAGATCAGAATGGATGTTTCTCTTTGGATAATGTTCGCAGTGGAAACTATAGTCTTTATGGATGGGTCCCTAATTTTATCGGCAATTACCAATACAATCGTTTCATTGCTGTAACCCCAGGCAGTGACATCAATGTCGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCGAAGTATATTAATAAACTTTATGTCAATCATTCAGATAAGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAGTTATATCCTGACGAGGATCTAGTTTATACAGTTGGGCTTAGTGAGTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACTACCTGGAAAATTAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCCACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTCCTCCATTATTCACAACTGGATTGATTGGAAAGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGTATGTACACGGTTGACATTCCGGGCGGTGAGCTTGTGGTAGTTATAGACAATGGTATATTGCAATTGACACTGTCCAAGCCAGATGGAAATGTAACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCCGGGAACCACGGGAACGTTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATTGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGGCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCCTATGCCATCTATGAGCACATGAGGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTAAGAAAGGACAAGTTTCATTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCTGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAACCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCACGTGGGCCCATATGCTCTTGCTGTAAGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCAGCTTCTGAGGATTTTCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTACTTGACAGATATGTTAACCAAGAGCAGACGCCGGCAACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGCTGGATCATGGCAAACTGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCGTTTAACATTGAACACGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGTTGTCATTAGTGTCTCTGCAGGTAGTGATATGGATGTAGGTGATCTTGTTTATGAGCCGCCTAGAAACGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTACATTAACAAATTGTATGTCAATCATCCAGATAGATTCAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGCTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGCGGCACTTATACATTGCGAGTGGCTCTGGCCACTGCCAATGTTGCTGAACTGCAGGTACTCATCCTATATTACACTGTTTAA | 3462 | 44.57 | MKNSKFFPSILFCLFSSFFFYFHAPFISATTTIPQPPRQFSSSWPPENFHHAVSMAAAAGHDPDPAAPPPLQLRIYDQHVVMDNGIIGVNLSNPNGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGGDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPDDRKPPRGEALAYPEAVLLVDPVEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQIAATEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVIKFGSNEPWKKVFGPIFIHLNSLPEGEDPLTLWDNAKKQMMVEVQSWPYGFPASEDFLKSDQRGTVSGRLIMRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGCFSLDNVRSGNYSLYGWVPNFIGNYQYNRFIAVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDKFRQYGLWERYAELYPDEDLVYTVGLSEYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALPPLFTTGLIGKDNTIARHGIHGLYRMYTVDIPGGELVVVIDNGILQLTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTPGTTGTFDEMRGKEFEVIVQNEEQIELSFKRNYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIYEHMREWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAVREDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNQEQTPATDAYVGLAAPGDAGSWQTENKGYQFWTKTDADGSFNIEHVRIGDYNLYAWVPGFIGDYRYDVVISVSAGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTAGVSDYTKDWFFAHVNRGTYTLRVALATANVAELQVLILYYTV | 1153 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 30016075 | 30029418 | - | Lsi04G022890.1 | Lsi04g02289 | 662338 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g02289 | 1153 | SUPERFAMILY | Starch-binding domain-like | 942 | 1039 | IPR013784 | GO:0030246 | |
Lsi04g02289 | 1153 | Pfam | Polysaccharide lyase family 4, domain II | 388 | 460 | IPR029413 | - | |
Lsi04g02289 | 1153 | Pfam | Polysaccharide lyase family 4, domain II | 969 | 1039 | IPR029413 | - | |
Lsi04g02289 | 1153 | CDD | RGL4_C | 476 | 663 | - | - | |
Lsi04g02289 | 1153 | Pfam | Polysaccharide lyase family 4, domain III | 474 | 662 | IPR029411 | - | |
Lsi04g02289 | 1153 | Pfam | Polysaccharide lyase family 4, domain III | 1054 | 1138 | IPR029411 | - | |
Lsi04g02289 | 1153 | Gene3D | - | 115 | 317 | IPR014718 | GO:0030246 | |
Lsi04g02289 | 1153 | Gene3D | - | 472 | 660 | - | - | |
Lsi04g02289 | 1153 | Gene3D | - | 942 | 1041 | - | - | |
Lsi04g02289 | 1153 | Gene3D | - | 362 | 461 | - | - | |
Lsi04g02289 | 1153 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 636 | 1127 | - | - | |
Lsi04g02289 | 1153 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 96 | 635 | - | - | |
Lsi04g02289 | 1153 | SUPERFAMILY | Galactose mutarotase-like | 637 | 876 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Lsi04g02289 | 1153 | SUPERFAMILY | Galactose-binding domain-like | 1051 | 1148 | IPR008979 | - | |
Lsi04g02289 | 1153 | SUPERFAMILY | Starch-binding domain-like | 362 | 462 | IPR013784 | GO:0030246 | |
Lsi04g02289 | 1153 | CDD | RGL4_M | 945 | 1044 | IPR029413 | - | |
Lsi04g02289 | 1153 | CDD | RGL4_N | 79 | 325 | - | - | |
Lsi04g02289 | 1153 | PANTHER | RHAMNOGALACTURONATE LYASE B-RELATED | 636 | 1127 | - | - | |
Lsi04g02289 | 1153 | PANTHER | RHAMNOGALACTURONATE LYASE B-RELATED | 96 | 635 | - | - | |
Lsi04g02289 | 1153 | CDD | RGL4_N | 636 | 915 | - | - | |
Lsi04g02289 | 1153 | CDD | RGL4_M | 365 | 464 | IPR029413 | - | |
Lsi04g02289 | 1153 | SUPERFAMILY | Galactose-binding domain-like | 471 | 659 | IPR008979 | - | |
Lsi04g02289 | 1153 | Pfam | Rhamnogalacturonate lyase family | 99 | 234 | IPR010325 | - | |
Lsi04g02289 | 1153 | Pfam | Rhamnogalacturonate lyase family | 632 | 821 | IPR010325 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00435 | Lsi-Chr1:3660429 | Lsi04g02289 | Lsi-Chr4:30016075 | 3.21E-180 | dispersed | |
Lsi04g02289 | Lsi-Chr4:30016075 | Lsi05g00795 | Lsi-Chr5:11611605 | 1.49E-60 | dispersed | |
Lsi04g02289 | Lsi-Chr4:30016075 | Lsi04g02290 | Lsi-Chr4:30035350 | 0 | tandem | |
Lsi01g00824 | Lsi-Chr1:6532837 | Lsi04g02289 | Lsi-Chr4:30016075 | 1.06E-29 | wgd | |
Lsi04g02289 | Lsi-Chr4:30016075 | Lsi08g01009 | Lsi-Chr8:18634330 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g02289 | K18195 | - | csv:101203789 | 1043.49 |