Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02289 ATGAAAAACAGTAAATTTTTTCCCTCAATTTTATTTTGCCTCTTCTCTTCTTTTTTCTTTTACTTTCACGCGCCCTTCATCTCTGCAACAACAACAATACCACAGCCTCCTCGTCAATTTTCTTCTTCATGGCCGCCGGAGAACTTCCACCACGCTGTCTCGATGGCCGCCGCCGCCGGACACGACCCCGACCCCGCGGCACCTCCTCCGTTGCAACTAAGGATTTACGACCAACATGTTGTGATGGACAACGGCATAATCGGAGTTAACTTGTCGAATCCAAATGGAAGTTCAGGAACCAAGGGCATTTTTGATCGAATTGAAGCAACAGATTTCAAGGTAATTGTAGAAAATGATGAACAAATAGAACTCTCATTCAGCAGAACCTACAATTCATCTATCGGAGGTGACCTCATTCCCTTAAACATCGACAAAAGGTTTGTGATGCTTCGTAATTCATCAGGATTCTATTCGTACGCTATTTACGAACACTTGAAAGAATGGCCTGCGTTTATCATCGACAACACCAGAATCGTATTCAAGCTCCGAAAAGACAAGTTTCGTTACATGGCTGTAGCAGATAAGAGACAGAGATTCATGCCTTTACCCGACGATCGGAAGCCACCGCGAGGGGAAGCCCTAGCTTATCCGGAGGCCGTTCTTCTTGTCGATCCTGTAGAACCAGAGCTCAAGGGGGAGGTGGATGACAAGTACCAATACGGCTGCGAAAGCAAAGATGCTCGGGTTCACGGGTGGATATCCACCGACCCGCCCATTGGCCTTTGGCAAATCGCAGCCACCGAGGAGTTTCGCTCCGGTGGACCCCTCAAACAGTTTCTCACCTCCCATGTGGGTCCCACAACCCTTACTGTTTTTCATAGCGCTCATTACGCAGGAGAGGATATGGTTATAAAGTTCGGAAGTAATGAGCCATGGAAGAAGGTTTTCGGTCCTATCTTTATCCATCTTAATTCCTTGCCTGAAGGAGAGGATCCCCTTACACTCTGGGATAATGCTAAAAAACAGATGATGGTCGAAGTTCAAAGCTGGCCTTACGGTTTCCCTGCTTCTGAGGATTTTCTCAAATCCGATCAACGAGGCACCGTCAGCGGCAGATTGATAATGCGGGAGAGATTTGTGAGTGATGAATCTGTGCCTGCAAGTGGTGCATATGTGGGGTTGGCACTTCCTGGAGAACTTGGCTCTTGGCAAACCGAAAGCAAGGGCTACCAATTCTGGACGAGAGCAGATCAGAATGGATGTTTCTCTTTGGATAATGTTCGCAGTGGAAACTATAGTCTTTATGGATGGGTCCCTAATTTTATCGGCAATTACCAATACAATCGTTTCATTGCTGTAACCCCAGGCAGTGACATCAATGTCGGTGAACTTGTTTTTGAGCCCCCAAGAGATGGTCCTACATTGTGGGAAATAGGCATTCCTGACCGTACTGCTGCAGAATTCTATGTACCGGATCCTAATCCGAAGTATATTAATAAACTTTATGTCAATCATTCAGATAAGTTTAGGCAGTATGGATTATGGGAAAGATACGCAGAGTTATATCCTGACGAGGATCTAGTTTATACAGTTGGGCTTAGTGAGTACAGAAAAGATTGGTTCTTTGCACAAGTTACCAGGAAGATAGGGGACAACAAATATGCTGGAACTACCTGGAAAATTAAGTTCCAACTTGACAGTCCAGATACACATGGAACATATAGGCTGCGTCTTGCATTGGCCACTGCACATGCTGCAGAATTACAAGTTCGACTGAATGATGCACAAGCACTTCCTCCATTATTCACAACTGGATTGATTGGAAAGGACAATACTATAGCTAGACATGGAATCCATGGTCTCTATCGTATGTACACGGTTGACATTCCGGGCGGTGAGCTTGTGGTAGTTATAGACAATGGTATATTGCAATTGACACTGTCCAAGCCAGATGGAAATGTAACTGGGATAAAATACAACAGCATTGACAATGTTTTAGAAGTTGATGATAAGGAAGCTCATAGAGGGTACTGGGACCTCGTGTGGAACTCTGGGACTCCGGGAACCACGGGAACGTTCGATGAGATGAGAGGAAAAGAATTTGAAGTGATTGTGCAAAATGAGGAACAAATAGAGCTCTCATTTAAAAGGAATTATTCATTCAAGGACAAGGCTGTTCCCTTAAACATAGACAAAAGGTTCATAATGCTTCGTAACTCCTCTGGATTCTACTCCTATGCCATCTATGAGCACATGAGGGAATGGCCACCATTCAACCTTCCTCAAACAAGGATTGTGTTTAAGCTAAGAAAGGACAAGTTTCATTATATGGCCATAGCAGATGACAGACAGAGATTCATGCCACTTCCTGAGGATAGACTACGTCACAGAGGAAAACCTTTGGATTTTCCAGAGGCTGTATTGCTAGTCAACCCTAAAGAACCTGAGTTCAAGGGAGAGGTGGATGATAAGTACCAATATTCTTGTGAAAATAAAGATCTTAAAGTGCATGGATGGATATCCATGGATCCTCCGGTGGGTTTCTGGCAAATCACTCCAAGCAGTGAGTTCAGATCAGGCGGACCCCTCAAACAGAACCTTACCTCTCACGTGGGCCCATATGCTCTTGCTGTAAGAGAGGACTTGGTGCTGAAGCTCAGTCCTGATGAGCCGTGGAAGAAAGTTTTTGGCCCTGTATTTTTCTATCTAAATTCTGTTTCTGATGGAGGTGATCCACTTTCTTTGTGGGAAGATGCTAAAACTCAGATGACGAAGGAAGTTCAAAGCTGGCCCTATTCTTTTCCAGCTTCTGAGGATTTTCCCCCACCAAACCAACGTGGTAGATTGACTGGCAAATTATTTGTACTTGACAGATATGTTAACCAAGAGCAGACGCCGGCAACTGACGCGTATGTGGGACTGGCAGCACCAGGAGATGCTGGATCATGGCAAACTGAAAACAAGGGTTACCAGTTTTGGACCAAAACAGATGCAGATGGCTCGTTTAACATTGAACACGTACGCATCGGCGACTACAATCTTTATGCTTGGGTTCCTGGCTTCATTGGTGACTACCGTTATGATGTTGTCATTAGTGTCTCTGCAGGTAGTGATATGGATGTAGGTGATCTTGTTTATGAGCCGCCTAGAAACGGGCCCACATTGTGGGAAATAGGCATTCCCGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCTGATCCAAAGTACATTAACAAATTGTATGTCAATCATCCAGATAGATTCAGGCAATATGGACTGTGGGAAAAATATGCAGAGTTATATCCTGATTCAGACTTAGTATATACAGCTGGTGTCAGTGATTACACAAAAGATTGGTTCTTTGCTCATGTTAATCGCGGCACTTATACATTGCGAGTGGCTCTGGCCACTGCCAATGTTGCTGAACTGCAGGTACTCATCCTATATTACACTGTTTAA 3462 44.57 MKNSKFFPSILFCLFSSFFFYFHAPFISATTTIPQPPRQFSSSWPPENFHHAVSMAAAAGHDPDPAAPPPLQLRIYDQHVVMDNGIIGVNLSNPNGSSGTKGIFDRIEATDFKVIVENDEQIELSFSRTYNSSIGGDLIPLNIDKRFVMLRNSSGFYSYAIYEHLKEWPAFIIDNTRIVFKLRKDKFRYMAVADKRQRFMPLPDDRKPPRGEALAYPEAVLLVDPVEPELKGEVDDKYQYGCESKDARVHGWISTDPPIGLWQIAATEEFRSGGPLKQFLTSHVGPTTLTVFHSAHYAGEDMVIKFGSNEPWKKVFGPIFIHLNSLPEGEDPLTLWDNAKKQMMVEVQSWPYGFPASEDFLKSDQRGTVSGRLIMRERFVSDESVPASGAYVGLALPGELGSWQTESKGYQFWTRADQNGCFSLDNVRSGNYSLYGWVPNFIGNYQYNRFIAVTPGSDINVGELVFEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHSDKFRQYGLWERYAELYPDEDLVYTVGLSEYRKDWFFAQVTRKIGDNKYAGTTWKIKFQLDSPDTHGTYRLRLALATAHAAELQVRLNDAQALPPLFTTGLIGKDNTIARHGIHGLYRMYTVDIPGGELVVVIDNGILQLTLSKPDGNVTGIKYNSIDNVLEVDDKEAHRGYWDLVWNSGTPGTTGTFDEMRGKEFEVIVQNEEQIELSFKRNYSFKDKAVPLNIDKRFIMLRNSSGFYSYAIYEHMREWPPFNLPQTRIVFKLRKDKFHYMAIADDRQRFMPLPEDRLRHRGKPLDFPEAVLLVNPKEPEFKGEVDDKYQYSCENKDLKVHGWISMDPPVGFWQITPSSEFRSGGPLKQNLTSHVGPYALAVREDLVLKLSPDEPWKKVFGPVFFYLNSVSDGGDPLSLWEDAKTQMTKEVQSWPYSFPASEDFPPPNQRGRLTGKLFVLDRYVNQEQTPATDAYVGLAAPGDAGSWQTENKGYQFWTKTDADGSFNIEHVRIGDYNLYAWVPGFIGDYRYDVVISVSAGSDMDVGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPDPKYINKLYVNHPDRFRQYGLWEKYAELYPDSDLVYTAGVSDYTKDWFFAHVNRGTYTLRVALATANVAELQVLILYYTV 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30016075 30029418 - Lsi04G022890.1 Lsi04g02289 662338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02289 1153 SUPERFAMILY Starch-binding domain-like 942 1039 IPR013784 GO:0030246
Lsi04g02289 1153 Pfam Polysaccharide lyase family 4, domain II 388 460 IPR029413 -
Lsi04g02289 1153 Pfam Polysaccharide lyase family 4, domain II 969 1039 IPR029413 -
Lsi04g02289 1153 CDD RGL4_C 476 663 - -
Lsi04g02289 1153 Pfam Polysaccharide lyase family 4, domain III 474 662 IPR029411 -
Lsi04g02289 1153 Pfam Polysaccharide lyase family 4, domain III 1054 1138 IPR029411 -
Lsi04g02289 1153 Gene3D - 115 317 IPR014718 GO:0030246
Lsi04g02289 1153 Gene3D - 472 660 - -
Lsi04g02289 1153 Gene3D - 942 1041 - -
Lsi04g02289 1153 Gene3D - 362 461 - -
Lsi04g02289 1153 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 636 1127 - -
Lsi04g02289 1153 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 96 635 - -
Lsi04g02289 1153 SUPERFAMILY Galactose mutarotase-like 637 876 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lsi04g02289 1153 SUPERFAMILY Galactose-binding domain-like 1051 1148 IPR008979 -
Lsi04g02289 1153 SUPERFAMILY Starch-binding domain-like 362 462 IPR013784 GO:0030246
Lsi04g02289 1153 CDD RGL4_M 945 1044 IPR029413 -
Lsi04g02289 1153 CDD RGL4_N 79 325 - -
Lsi04g02289 1153 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 636 1127 - -
Lsi04g02289 1153 PANTHER RHAMNOGALACTURONATE LYASE B-RELATED 96 635 - -
Lsi04g02289 1153 CDD RGL4_N 636 915 - -
Lsi04g02289 1153 CDD RGL4_M 365 464 IPR029413 -
Lsi04g02289 1153 SUPERFAMILY Galactose-binding domain-like 471 659 IPR008979 -
Lsi04g02289 1153 Pfam Rhamnogalacturonate lyase family 99 234 IPR010325 -
Lsi04g02289 1153 Pfam Rhamnogalacturonate lyase family 632 821 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00435 Lsi-Chr1:3660429 Lsi04g02289 Lsi-Chr4:30016075 3.21E-180 dispersed
Lsi04g02289 Lsi-Chr4:30016075 Lsi05g00795 Lsi-Chr5:11611605 1.49E-60 dispersed
Lsi04g02289 Lsi-Chr4:30016075 Lsi04g02290 Lsi-Chr4:30035350 0 tandem
Lsi01g00824 Lsi-Chr1:6532837 Lsi04g02289 Lsi-Chr4:30016075 1.06E-29 wgd
Lsi04g02289 Lsi-Chr4:30016075 Lsi08g01009 Lsi-Chr8:18634330 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02289 K18195 - csv:101203789 1043.49