Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02290 ATGGTTCCTAAAAGGCATGCGGAGGAACATTTTTTGAACACCCATGCTCCAGTTTCCTGTTCGCTGTGTAGCGAGACCATGGAACGGGACATTTTAGCCATTCATAAAGGTGAGAATTGCCCTCAAAGGATTGTCACTTGCGAGTTCTGTGAGTTTCCATTGCCAGCAATAGATTTGGCTGAACATCAGGAAGTTTGTGGTAACCGGACTGAACTTTGTCATCTGTGTCGTCGATATATAAGACTACGAGAGCGATATAGCCATGAAAACAACTGCAAGGGTGTTGTAGCTGCGGATAACATTGCAGAATCTTCCAGGGATGTCGGGGCAGCACCAGAAAGAGATCAAGCTAGAGATCGAGGTGCTCGAAGAAGACAGCCCCAGGAGTTTTCTACGCGACATCTTATATTCACTATTGCAATAACAGATCAGGCGTCCGATTGCAGATACGAGATCATCATGATTAAAGGGTCAAGTTTTAGGGTTATAGTGGAAAATGAGGAACAGGTCGAGCTTTCTTTTATGAGGATGTGGGATCCCTCCCTTGAGGGCAAGTTTGTTCCTTTGAATATAGACAAAAGGTTCATAGTACTACGGGGTTCCTCTGGATTCTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCAGATTTTGATATTGGTGAAACCAGGATCACTTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCTCTGCCCGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTATCCTGAAGCTGTCTTGCTTACTAATCCCAAGAATCCTGAACTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAAAGACTTAAAGGTTCATGGATGGATATGCACCAATCCGCCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTTCGGTCAGGCGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTGTAGGTTATCGAGCACTAATATTTCTTAGTACTCATTATGCGGGACAAGATTTAGTGCCAAAATTTAGAGCTGGTGAGCCATGGAAGAAAGTTTTTGGCCCTATTTTTCTCTATCTTAATTCCACCTCAGTTGGAGATGACCCATTTTGGTTATGGGAGGATGCTAAAATTCAGATGATGGCAGAAGTCGAAAGTTGGCCATATAGTTTCCCTGCATCTGAGGATTTCCCGAAAGTAGATCAACGGGGTATTGTTCGTGGTCGGCTACTGGTTTTTGACAGGTATATGGATCTAGACTATCTTCCAGCCAGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACATACACACTGGCGACTATAATCTATATGCATGGGTCCCTGGCTTCGTTGGAGATTACCGTTGTGGTGCCCTCATCAACGTAAACCAAGGATCTTGTATTGAAATGGGCGATCTTGTATATGAACCTCCAAGAGATGGGCCTACACTATGGGAAATAGGCATTCCCGATCGCTCCGCATCTGAGTTCTATGTTCCTGATCCTAATCCAATACATATTAATAAGCTCTTTGTCAATCATCCTGACAGGTTCCGGCAGTACGGGTTGTGGGACAGATATGCCGAATTATACCCGGACGAGGATTTAGTATACACAGTTGGCACAAGTGACTATACCAAAGATTGGTTCTTTGCTCAGGTCCCTAGCGTGGGCGTAGCAGGCTGTCATCTTGTTGAAGGAGATAACATAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTCCAGGGTATCATGTATGATTATATCCGTCTGGAAGGTCCTCCAACAAAGTGA 1905 44.78 MVPKRHAEEHFLNTHAPVSCSLCSETMERDILAIHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCRRYIRLRERYSHENNCKGVVAADNIAESSRDVGAAPERDQARDRGARRRQPQEFSTRHLIFTIAITDQASDCRYEIIMIKGSSFRVIVENEEQVELSFMRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPELKGEVDDKYQYSCENKDLKVHGWICTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAVGYRALIFLSTHYAGQDLVPKFRAGEPWKKVFGPIFLYLNSTSVGDDPFWLWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGIVRGRLLVFDRYMDLDYLPASGAFVGLSAPGEGYQFWTRADDGGYFTINHIHTGDYNLYAWVPGFVGDYRCGALINVNQGSCIEMGDLVYEPPRDGPTLWEIGIPDRSASEFYVPDPNPIHINKLFVNHPDRFRQYGLWDRYAELYPDEDLVYTVGTSDYTKDWFFAQVPSVGVAGCHLVEGDNIIFLTQPRCTSPFQGIMYDYIRLEGPPTK 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30035350 30047044 - Lsi04G022900.1 Lsi04g02290 662339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02290 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 593 633 - -
Lsi04g02290 634 Pfam Polysaccharide lyase family 4, domain III 519 592 IPR029411 -
Lsi04g02290 634 Pfam Polysaccharide lyase family 4, domain II 452 504 IPR029413 -
Lsi04g02290 634 Gene3D - 182 392 IPR014718 GO:0030246
Lsi04g02290 634 SUPERFAMILY Galactose mutarotase-like 211 384 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lsi04g02290 634 Pfam Rhamnogalacturonate lyase family 154 282 IPR010325 -
Lsi04g02290 634 MobiDBLite consensus disorder prediction 105 128 - -
Lsi04g02290 634 Gene3D - 417 501 - -
Lsi04g02290 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 154 591 - -
Lsi04g02290 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 154 591 - -
Lsi04g02290 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 593 633 - -
Lsi04g02290 634 CDD RGL4_N 151 381 - -
Lsi04g02290 634 MobiDBLite consensus disorder prediction 108 128 - -
Lsi04g02290 634 SUPERFAMILY Starch-binding domain-like 420 502 IPR013784 GO:0030246
Lsi04g02290 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 70 IPR013083 -
Lsi04g02290 634 SUPERFAMILY Galactose-binding domain-like 516 629 IPR008979 -
Lsi04g02290 634 CDD RGL4_M 419 509 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00824 Lsi-Chr1:6532837 Lsi04g02290 Lsi-Chr4:30035350 2.29E-07 dispersed
Lsi04g02290 Lsi-Chr4:30035350 Lsi08g01009 Lsi-Chr8:18634330 5.69E-08 dispersed
Lsi04g02289 Lsi-Chr4:30016075 Lsi04g02290 Lsi-Chr4:30035350 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02290 K18195 - csv:101203947 863.218