Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02291 ATGGGGAGAGGCAAGATTGTAATTAGGAGGATCGATAATTCGACGAGCAGACAGGTGACTTTCTCGAAGCGCAGGAGCGGACTGCTGAAGAAGGCGAAAGAACTAGCGATCCTTTGTGACGCCGATGTTGGAGTCATCATCTTCTCCAGCACCAGCAAGCTCTATGAATACTCCAGCACCAGCATGAAAACACTAATAGAACGATATAACAAAACAAAAGAGGAGCACCATCAGCTTGGGATCTCGACTTCAGAAGTCAAGTACTGGCAAAGGGAAGCAGCAACATTACGGCAGCAACTGCAGAGCTTACATGAAAATCATCGGCAGATGATGGGTGAAGAGCTGACTGGTTTGAGCGTCAAAGACCTACAGAATCTAGAAAATCAATTGGAGATAAGTCTCCGTGGCGTCCGTATGAAGAAGGGAAACCTAATTCACCATGACAATATGGAACTTTATAAGAAGGTAAACCTAATTCGTCAAGAAAACCAGGAATTACACAAAAAGGTCTATGGAACAAAGGATGCCAATGGAGCACACATAAGCAGTCTTACAAACGGACTTGGTGTTGGAGAGGATGCAGGCATACCTATCAACCTTCAACTCAGCCAACCACAGCAACAAGACAATGGGACACCAGAAAGAGCTACAAAACTGGGCAGACTACAACTACGCTAG 678 45.28 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDADVGVIIFSSTSKLYEYSSTSMKTLIERYNKTKEEHHQLGISTSEVKYWQREAATLRQQLQSLHENHRQMMGEELTGLSVKDLQNLENQLEISLRGVRMKKGNLIHHDNMELYKKVNLIRQENQELHKKVYGTKDANGAHISSLTNGLGVGEDAGIPINLQLSQPQQQDNGTPERATKLGRLQLR 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30056403 30076240 + Lsi04G022910.1 Lsi04g02291 662340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02291 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi04g02291 225 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Lsi04g02291 225 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi04g02291 225 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lsi04g02291 225 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi04g02291 225 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Lsi04g02291 225 MobiDBLite consensus disorder prediction 202 225 - -
Lsi04g02291 225 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 223 - -
Lsi04g02291 225 Coils Coil 86 113 - -
Lsi04g02291 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi04g02291 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi04g02291 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi04g02291 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi04g02291 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi04g02291 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 223 - -
Lsi04g02291 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02291 Lsi-Chr4:30056403 Lsi08g00034 Lsi-Chr8:849912 3.08E-43 dispersed
Lsi01g00027 Lsi-Chr1:320358 Lsi04g02291 Lsi-Chr4:30056403 6.39E-30 transposed
Lsi03g00982 Lsi-Chr3:18966933 Lsi04g02291 Lsi-Chr4:30056403 1.53E-35 transposed
Lsi03g01188 Lsi-Chr3:22316959 Lsi04g02291 Lsi-Chr4:30056403 2.18E-37 transposed
Lsi05g00361 Lsi-Chr5:4597288 Lsi04g02291 Lsi-Chr4:30056403 4.89E-11 transposed
Lsi01g00825 Lsi-Chr1:6548261 Lsi04g02291 Lsi-Chr4:30056403 2.48E-66 wgd
Lsi04g02291 Lsi-Chr4:30056403 Lsi08g01026 Lsi-Chr8:18835515 2.43E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25259 PF01486 K-box 4.10E-22 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02291 K09264 - csv:101203545 417.157