Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02298 ATGGACGGATCAGAACAACAGCAGCAGCCAATTCTATGGCGTCCGTTCGTCAAACTTCAAAGCTGTTATGCAAACTCCAATGCCAATTTTAGAACCTTTCTCGTTTTGGTTCCATTGGAAGGGCTCAATCCACGCGCTCTTTTCCGCGTCCGAAACGTTTCAAAGCGGTTTGCTACAACGGCTCTCTTCGCCTCCTCCTCCTCCTCTGAGAGCCTCATCGCGACCTTCTTCCTCCTCTGTTGTTTGCTCTTTTTCCAGCTTTCAGATATGGACGCAACAGCGGGTCTAGGTTTGTATCCGTCGCACCGTACTAAAACTATTCATCTGGTGAGGCATGCCCAGGTTCTTCATAATGTGGCAGGGGACAAGGACGCGAACAAATATCAATCTTTTGATTGTTTTGATGCTCAACTTACCTCTTTAGGATGGAAACAGGTTGGCATTCTGCGGAAACATGTACAATCATGTGGTCTTTCTAAGAGAATTGAGTTGGTCATCACATCCCCCTTGTTCCGGACTATGCAAACAGCAGTTGGAGCATTTGGTGGTGAAGTTTACTCAGATGGTACGAATGCTCCTCCATTAATGGTAGAGAATGCAGGAGAAAGCAACTGCCCTGCAATTTCAAGTTTGAATTGCCCGCCCTTTTTGGCAGTTGAGCTTTGTCGGGAACATTTGGTGACTAAGGTCTGTAAATTCTCTCACGTTGGAGTTAATCCTTGTGATAAGAGGCGAACCATTAGCGAGTGTCGGTCTCTTTTCCCTGCAATTGATTTTTCGATGGTAAGTTGCATTGTTTTTGTCCATATTGAACACGATGAAGATATCCTGTGGAGGCCCGACATAAGAGAGACCAATAATGAAGTTGGAGATAGGGGATTGATTTTTCTTAAATGGTACATGTCATATAGATTTTGTGTTCTTGTAACTGCCATGTTCTTCCGTATAAACTCATGCTTCTGGTTCAAATTGATAATGTTGATATTCCTCTTGGCAGATTCTAGTGATGTAGAGATGGATGACCTTTTCTCCCTTAGATTACAACTGAAAATCTTGTTAGTTCCTTTGTTTGGGGTTGGGGTATATCTAATCCCTTTTGCTAGGCTCTGGACCCGGAAGGAGAAGGAGATTGCAATTGTCAGCCACTGTGGATTTTTATTTCATGTATTGAGTGTATTTGGAAATGACTGCCATCGTTCTATAGAGGATGAAATCTGCAAACAGTTTGCCAACTGTGAACTCCGTTCGTTTGTTCTTGTTGATTGGAGCATGAAGGGTTCAGAATCCTCAACGACCAATTTCCCGAGACGATTGCCTAAAAGGGTTGATCTTCCCAGTGATGTTGCAGCTGAAAAGCATCCGAGAAGGGAGCTACAAATGAAGATAAACGTGTCAAAGCAATTTGCTTCCGATACACGACTCTCTTCGCTTCCTCCTCCTCTAAGAGCCTCTTCGCGACATTCTTCTTCTTCTTCTTCCTCTGTTGTTTGCTCTTCTTCTCGCTTTTCAGATATGGACGCTTCAGGGGGTTTAAGTTTGTATCCATCGCACCGTACTAAAACTATTCATCTGGTGAGGCATGCCCAGGGATTTCATAATGTGGCAGGAGAGAAGGACGTGAACGAATATCTATCTTTTGATTACTTTGATGCTCAACTTACCTCTTTAGGATGGAAACAGGTAAGCCCTTATTTATCTATACTACTTTTTCCAAAATCTCTAACACGATTACTACCAGGAATCATTCTAAAAAGTTACATACGGCTAGTTTCATTGCTTATCATCTTGAACAAACATGAAATTTCAATTTGTTTTCTGAAGTCTAATGAACTGACAGATAGTATTTTTCCTTTCTGGGAAATGAAACAGGTTGGCAATCTGCGGAAACATGTACAATCATGTGGACTTTCTAAGAGAATTGAGTTAGTCATCACATCCCCATTGTTCAGGACCATGGAAACCGCGGTTGGAACATTCGGTGGTGAAGGTTATTCGGATGGTATAAATGCTCCTCCATTAATGGTAGCAAATGCAGGAGATTGCAACCGCCCTGCAATTTCAAGTTTGAATTGCCCGCCATTTTTGGCAGTAGAACTTTGTCGGGAACATTTGGTATTTTTAGTTGACTTCATTTGTTGGGCTGATTTTAATGGATGGCATTCGTATTCTTTCGGGTTATCAGGTGTTCATCCTTGTGACAAGAGGCGAAGTATTAGCGAGTATCGGTCTCTTTTCCCTGCGATTGATTTTTCAATGATTGAACATGATGAAGATACCCTGTGGAAGCCAGACATCAGAGAGACCAACGATGAAGTAGCAGATAGGGGACTGAAGTTTCTTAAATGTGGTATGAATATTACTTCATGTACCTTATGTGGCGCTTGTTACAGCTTCCTGCTCTGGACCCGGAAGGAGAAGGAGATTGCAGTTGTCAGCCACAGTGGATTCTTATTTCATGCGTTGAGTGCATTTGGAAATGACTGTCGTCCTTCTATAAAGGATGAAATCTGCAAACAATATATGGACTCTGCAAGAGGTCTGAGTTTGTATCCGTCGCACCGTTGTAAAACTATTCATCTGGTGAGACATGCGCAGGGAACTCATAATGTTGCAATGGAAAAGGATCACAGCTTGCTTCAATCTTATGATTATTTTGATGCTCAACTTTCCACTTTAGGATGGCAACAGGTTGACAATCTGCGGAAGCATGTGCAATCATGTGGAATTTCAAAGACAGTTGAGTTAGTCATTGTCTCCCCCTTGTTAAGTTTTCACCCGACTATGCAAACAGCAGTTGGCGCCTTTGGTGGAGATGAGTACAAAGATGGTATAATTGTTCCTCCATTAATGGTAGCAAACGTGGGGGGCAGCAACTATTCTGCAATTTCAAGTCTTAACTGCCCGCCATTTTTAGCAGTAGAGCTTTGTAGGGAACGTTTGGGTGTTCATCCATGTGATAAGAGGAGAAGCATTAGCGAGTATCGGCCTCTTTTCCCAGCAATTGATTTTTCAATGATTGAACATGATAATGATATCCTATGGACACCAGACAACAGAGAGACGAATGACCAGATTGTAGCAAGAGGACTGAAGTTTCTGAATTGTATTACTTGGTTGTCTCTTGCAGTTGAGTTCTACCGTGTTGTCTCTGCCTTTCATTTAGGAGGGGAAAAGTTGCTTCCAGCCAGTTGCCATATATTGAATTTTCATACTCTTTGTACGTCCTTTCTATGCATTATCTCTGGGAAAAATAGAATTCTGCATCTGCTGTGGACTCGGAAGGAGAAAGAGATTGCAATTGTCACCCACAGTGCATTCTTATTTGAGCTCCTGAAATGTTTTGGAAATGACTGCCATCCATCTATAAAGAATGAAGTCTGCAAATATTTTACAAACTGTGAGCTTCGATCCTTGGTTATCGTTGACAAGAGCATGATGGGATCAGATATCTCAAGGACTAATTACCCTGGCAAAATTCCTCAAGGCCTTGATCTTCCCAGTGACGTTGCCACTGAGAAGCAACCAGAGAAAGAAGCTATAAATGATGTTGAAGCTTGA 3558 42.27 MDGSEQQQQPILWRPFVKLQSCYANSNANFRTFLVLVPLEGLNPRALFRVRNVSKRFATTALFASSSSSESLIATFFLLCCLLFFQLSDMDATAGLGLYPSHRTKTIHLVRHAQVLHNVAGDKDANKYQSFDCFDAQLTSLGWKQVGILRKHVQSCGLSKRIELVITSPLFRTMQTAVGAFGGEVYSDGTNAPPLMVENAGESNCPAISSLNCPPFLAVELCREHLVTKVCKFSHVGVNPCDKRRTISECRSLFPAIDFSMVSCIVFVHIEHDEDILWRPDIRETNNEVGDRGLIFLKWYMSYRFCVLVTAMFFRINSCFWFKLIMLIFLLADSSDVEMDDLFSLRLQLKILLVPLFGVGVYLIPFARLWTRKEKEIAIVSHCGFLFHVLSVFGNDCHRSIEDEICKQFANCELRSFVLVDWSMKGSESSTTNFPRRLPKRVDLPSDVAAEKHPRRELQMKINVSKQFASDTRLSSLPPPLRASSRHSSSSSSSVVCSSSRFSDMDASGGLSLYPSHRTKTIHLVRHAQGFHNVAGEKDVNEYLSFDYFDAQLTSLGWKQVSPYLSILLFPKSLTRLLPGIILKSYIRLVSLLIILNKHEISICFLKSNELTDSIFPFWEMKQVGNLRKHVQSCGLSKRIELVITSPLFRTMETAVGTFGGEGYSDGINAPPLMVANAGDCNRPAISSLNCPPFLAVELCREHLVFLVDFICWADFNGWHSYSFGLSGVHPCDKRRSISEYRSLFPAIDFSMIEHDEDTLWKPDIRETNDEVADRGLKFLKCGMNITSCTLCGACYSFLLWTRKEKEIAVVSHSGFLFHALSAFGNDCRPSIKDEICKQYMDSARGLSLYPSHRCKTIHLVRHAQGTHNVAMEKDHSLLQSYDYFDAQLSTLGWQQVDNLRKHVQSCGISKTVELVIVSPLLSFHPTMQTAVGAFGGDEYKDGIIVPPLMVANVGGSNYSAISSLNCPPFLAVELCRERLGVHPCDKRRSISEYRPLFPAIDFSMIEHDNDILWTPDNRETNDQIVARGLKFLNCITWLSLAVEFYRVVSAFHLGGEKLLPASCHILNFHTLCTSFLCIISGKNRILHLLWTRKEKEIAIVTHSAFLFELLKCFGNDCHPSIKNEVCKYFTNCELRSLVIVDKSMMGSDISRTNYPGKIPQGLDLPSDVATEKQPEKEAINDVEA 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30122400 30148408 - Lsi04G022980.1 Lsi04g02298 662347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02298 1185 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 1086 1177 - -
Lsi04g02298 1185 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 505 562 - -
Lsi04g02298 1185 Gene3D - 515 835 IPR029033 -
Lsi04g02298 1185 SUPERFAMILY Phosphoglycerate mutase-like 520 826 IPR029033 -
Lsi04g02298 1185 SUPERFAMILY Phosphoglycerate mutase-like 856 1143 IPR029033 -
Lsi04g02298 1185 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 841 1036 - -
Lsi04g02298 1185 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 621 704 - -
Lsi04g02298 1185 SMART PGAM_5 521 820 IPR013078 -
Lsi04g02298 1185 SMART PGAM_5 106 389 IPR013078 -
Lsi04g02298 1185 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 728 834 - -
Lsi04g02298 1185 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 369 453 - -
Lsi04g02298 1185 Gene3D - 850 1154 IPR029033 -
Lsi04g02298 1185 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 90 302 - -
Lsi04g02298 1185 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 841 1036 - -
Lsi04g02298 1185 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 621 704 - -
Lsi04g02298 1185 MobiDBLite consensus disorder prediction 1170 1185 - -
Lsi04g02298 1185 CDD HP_PGM_like 106 177 IPR013078 -
Lsi04g02298 1185 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 90 302 - -
Lsi04g02298 1185 Gene3D - 104 473 IPR029033 -
Lsi04g02298 1185 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 1086 1177 - -
Lsi04g02298 1185 MobiDBLite consensus disorder prediction 470 495 - -
Lsi04g02298 1185 MobiDBLite consensus disorder prediction 1159 1185 - -
Lsi04g02298 1185 SUPERFAMILY Phosphoglycerate mutase-like 105 421 IPR029033 -
Lsi04g02298 1185 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 728 834 - -
Lsi04g02298 1185 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 369 453 - -
Lsi04g02298 1185 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 505 562 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02298 - - - bhj:120085712 521.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00989 Lsi-Chr3:19065002 Lsi04g02298 Lsi-Chr4:30122400 2.34E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g558 . . . . Bpe02g00151 . . Bma01g02575 . . . Cma09g00605 . . . Cpe06g00466 . . . . . . . . . . . . . . . Cone4ag1277 Cone7ag0874 . . Lsi04g02298 Csa03g04517 Chy04g00186 . . . Bda11g00812 . . Bpe05g00448 . . Sed05g1536 . Cmo09g00593 . . . Car09g00537 . . Bhi09g02533 Tan01g3880 Cmetu04g2852 . Hepe01g2188 Mch11g0734 . Cla11g01447 Cam11g1500 Cec11g1537 Cco11g1533 Clacu11g1664 Cmu11g1480 Cre11g1900 . . . Cme04g00216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02298 Lsi_Chr04 FPKM 8.238893 9.036339 13.071136 14.992926 4.417455 4.37488 4.076797 12.65542 13.421574 14.030905