Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02300 ATGGAGCTGAATGAAAATTATTTGTTAGAGGAAGTTTTAGGTGTGAGAAGAGAAATGAACTGGGAATTAGCAATATCTATGGAAATGAATGAGCTAATTTGTAGTGCAAATGGGTGGAATTTTGATTGCTCTGATTCTTTACCAATGGATCAGCACAATCTTAATTATCTTTATCTCAGTGGGCAAGGTCAGTACTGTTTGCCTACGGCGGCGGGGAGTACTACCGGCGGCGATTCAATGTTGGAGACTCCGCCGAGTAGTTTTGAGGTTTATAATGGGGAATATCCGATTACGAGTATGGAAGAGGAGGAACTTGGAATTTTGGAGGATGAGATTCATAATCTTGAAGTTCAGGCTAATTATTGTAAACTTGAGGCTAATGTTGAATCTCCTCAAAAAATCGTTCCCATTTTCAACACGGGTGCCACGTGCGACGATTTTCCACAACAAAAAATCGTCAATTACTCGTGTAGTAAGAAACTTCACGGGCAGCCGTCCAAGAATCTCATGGCCGAGAGACGGCGGAGGAAGCGTCTCAACGATCGCCTCTCTATGCTCAGATCCATTGTCCCCAAAATCAGCAAGGAACTGATGGAGAAAATCAAGACTTTGGAAAGGGAAATTGAAGTGGGGAATAATGATAATAATAATTATAATCCAAATAAGTTGAGGATTTTGAGAGATGTGAAACCAAATAATGAATATTTGGTGAGAAATTCGCCTAAGTTTAATGTGGAAAGAAGAGAGGATGACACAAGGATTGAGATTTGTTGTGCAGCAAAGCCAGGGTTATTATTGTCAACAGTGCAAACTCTTGAAACATTGGGACTTGATATTCAGCAATGTGTTATTAGTTGTTTCAATGACTTTGCAATCCAAGCTTCTTGTTCTGAGGAAAGCGAGCACAGAACAATGGTGAACACAGAAGAAATAAAGCAAGCATTATTTGAAAATGCTGGATATGGAGGAAAATGCCTGTAG 981 39.96 MELNENYLLEEVLGVRREMNWELAISMEMNELICSANGWNFDCSDSLPMDQHNLNYLYLSGQGQYCLPTAAGSTTGGDSMLETPPSSFEVYNGEYPITSMEEEELGILEDEIHNLEVQANYCKLEANVESPQKIVPIFNTGATCDDFPQQKIVNYSCSKKLHGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKELMEKIKTLEREIEVGNNDNNNYNPNKLRILRDVKPNNEYLVRNSPKFNVERREDDTRIEICCAAKPGLLLSTVQTLETLGLDIQQCVISCFNDFAIQASCSEESEHRTMVNTEEIKQALFENAGYGGKCL 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30168884 30171564 + Lsi04G023000.1 Lsi04g02300 662349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02300 326 Pfam Helix-loop-helix DNA-binding domain 169 227 IPR011598 GO:0046983
Lsi04g02300 326 Coils Coil 194 214 - -
Lsi04g02300 326 CDD ACT_UUR-ACR-like 252 293 - -
Lsi04g02300 326 Gene3D - 159 236 IPR036638 GO:0046983
Lsi04g02300 326 Coils Coil 98 118 - -
Lsi04g02300 326 PANTHER - 72 326 - -
Lsi04g02300 326 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 72 326 - -
Lsi04g02300 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 214 IPR011598 GO:0046983
Lsi04g02300 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 208 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02300 Lsi08g01047 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02300 Lsi-Chr4:30168884 Lsi05g00449 Lsi-Chr5:5739400 2.04E-28 dispersed
Lsi01g00831 Lsi-Chr1:6593034 Lsi04g02300 Lsi-Chr4:30168884 6.03E-68 wgd
Lsi04g02300 Lsi-Chr4:30168884 Lsi08g01047 Lsi-Chr8:19041201 1.48E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25260 PF00010 HLH 1.40E-06 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02300 - - csv:101222621 365.54