Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02305 ATGGCAGGAGTTCTCAGAGAAAGAGCACTCTCTCTCCTCGCCGCCGCTAACAACCACGGCGATTTAACGGTGAAGATTTCATCTTTGAAGCAGGTCAAGGATATCATACTGGCCATCGAGCCATCATTCGCAGCAGAGCTCTACTCCTACTTGGTCGAGCTTCAGTCCTCCCCCGAGAGCTTACTACATAGTGCTCGTCTGGATTACTTGGTAGTTTGGTGCCGGATTAATTTGAATTTAAATGTTGTGCTCCCAAGGGGACTTTGTCCTCGTTCTGGTTCATTTATAGAGCTCCACTCAAGAGACCAAGGGCAGTTTTATCGAATTAGGAAATTTAGTCGGAGAGAGATGGTGATTGAAGACATTGGATTAAGAGCCATGGAACATTCTCCTCTGTTAATGTCGGTTTTATTGACATCTTTAAAGGATGAAGAATCAATCGTAGCAGGACAATCAATTATTAGTGGCCAAAAATTATTTTGTGTTACTTTAAGAGAGATGACATTGCAGCTTTATAAATTAGATGCTAATTTTAGAACTCCACAGTTGCATCGGCGAGGTAAAGTTGAAAGATGGCTTGAAGAACTGTGGATGAGAATGTTGAAGTTTAAAGATGAGGTTTTGGCAGTTGCTATAGAGGTATGTGTGTGTGTTGTTTATGCTCAAAATCTCAATGTATGTCTTCAGAGGAATTTTCCTTACAAAACTTGTCATACGTTTCCTGGTTCTGTTGGGAGGAGATTGCTGGCTTTGAAATTTTTGGAAACGTATGTTCTACTTTTTACATCCGATACAAATGATCCACAGAAAGCAATCTCAGAAGGAAGTAGGGATGTTTTTAACATTTCATGGCTAGCTGGTGGGTTTCCTATTTTGGATCCAGTTGGGCTAATGTCAGAAGCTAATAGGATGCTTGGTGTTCTGTTGAATTTGTTGCAGACCAGTTCTGTTCCTGGTACATACACAGTAACAGTTGTCAGTAGTTTAGCAGCTATAGCAAGGAAAAGACCAGTTCATTATGGTAACATTCTATCGGCACTGCTGGAATTTGTTCCAAGTTTTGAGACAATAAAAGGGCGTCATGCTGCCAGCATACAGTATTCTATAAGATCTGCCCTTTTGGGATTCCTAAGGTGTATGCATCCGGCTTTTGTAGAGTTTGGTTTTCAGTCAAGGGATAGATTGCTAAAGGCTTTAAGAGCTATAAATGCTGGAGATGCTGCAGATCAAGTAATCAGGCAAGTGGACAAAATGGTGAAAGCTGCAGATCGAGCTTCACGTGATGCTTGGCTGGGCAAGGATGACCAATCATCAAATCAGCTCAATGCATCAGTGGATCTAACAAGAAAAAGACCTAGGCTTCTGGACGATGAAGAACTTCCCAATGGCCGAGAGGTTTCCAAGCAATTCCGCTTTGGTCCAGATGTTCACCCAATTCCCACATCTCAAAAAGATGGTTCTCTTCAGAATGCCACCTCTAATGGGACATCCCATGATGTTTCTACGTTAGATGTTGAATTGACTCCTGCAGAGCAGATGATTGCGATGATTGGTGCCTTACTTGCTGAAGGGGAGCGAGGTGCAGAGTCGCTTGAAATTCTGATTTCAAATATTCATCCTGACTTGCTGGCTGATATTGTCATAACTAACATGAAGAACTTGCCCAAAGCTTCCCCTCCTTTAACTTGGCATGGGGACTTGCCTGTAACTCGTCAAGGAAGTAGTCACGTGCAGGTTCTGGCGCCATCAGCCCCACTGAGTTCTGTGCAAACTTCAGTTGCTACTGCACAAGTTCCTTTTTCTTCGGCCACCTCAGCTGGTTCAACTTTTGCTGAGTCTACTGTCAGTAGTCTCCCCATTGATTCTAAACGTGATCCAAGAAGGGATCCCCGCCGCCTTGATCCTCGTCGTGGAGGAGTATCTTCTGCTTCTAGTGTGGAAGAGGCAAGTTCAAACATATCTGATGTTGATGGCTCCATATCTTTGGGAAAATCTGCTTCGGTTCCAGTTTCTGTGACAATTGAGAATTCTTCGGTATCTCTTATATCAAAAACGAATGTTGAAGAAAAAATTATGGAGACTCAATTCGTGTTTGGAACAGATCAATCAACCCCCAAATCAAGATCTCCTGATAGAGCTGAGAAAGCCGACAGTATATTAGAGATTAATGCCCCTCTGGATCCCATGCCTACTGCTGTCGGGAAAGCTGATGATGGTTTAGTTGCAGTTAATTTGTTTGATGACTTGGCAACTAAGAGGGATGATACATCGTCTTCTATAGAATACAATCAGTATTCTCCATCAGTTACAAATGCAGCTGCATCTGAAGATACCTGTGAGGAGTTGCCTTTGCTTCCACCATACGTTGACTTGACTCCAGAACAGCAAACAACTGTAAGAAATTTTGCAGCTGAAAAGATATTTGATTCATGCAAGAATTTAAATGGGGCAGACTGTCAGCAGATACGCTTGGCAATAATTGCTCGATTGGTTGCTCAGGTTGGTGCTGATGATGATATTGTTCGAATGTTGGAAAAGCAAGTTGCTGTCGATTACCAACAGCAAAAGGGGCATGAGCTTGCTTTGCATGTCTTATATCACCTGCATTCACTTGATATTCTGGATTCAGTGGAAAGTTCTTCTTTCGCTGTGTACGAGAAGTTTCTTCTAGTTGTGGCTAAATCGTTGCTAGATGCTTTTCCAGCTTCGGACAAATCTTTTAGTAGACTTCTCGGTGATGTTCCAGTTTTGCCGGACTCTACCTTGGAACTATTACATAACCTTTGCTATTGTGATATTACTGACAACCAGGGGAAGGGTTCTCCTGATATTGAACGTGTCACACAAGGCCTTGGCACTGTTTGGAATTTGATTGTGAAGCGTCCATATAGTCGGCAAGCTTGCTTAGATATTGCTCTGAAGTGTGCTATGCATTCAGAAGTTAAGGTTCGAGCAACAGCTATTAGACTGGTGGCAAACAAACTCTACCGGTTAAGTTACATTTCAGATAGGATTGAGCAACATGCAACAAACATGTTCCTGTCTGCAGTAAATGACGTAGATCAGACAGATGTAGAGCCTTCACCATATGGATCGGTTGAACAAAGAACGGGAGGAGAGGGTGAGAGTCAGGAAACATCCGTTGGTGGTTCTCAGGTGTCAGATCTCGGAACATCAGAAAACGATTCAATGAAGAGTTCACAACCTACCGTTCATGGCAGTTCAACCTTGTCACTTTCAGAAGCTGAAAGACACATTTCTCTTCTTTTTGCTCTATGCATGAAGAAACCTTGTCTGCTTCGGTTTGTATTTGATGCTTATGGACGGGCTCCTAGAGCAGTGAAAGAGGCCGTTCATGAACATATCCCTAATCTTATTACGGCCCTAGGGTCATCTGATTCTGACTTGCTTAGAATAATATCAGATCCACCTCCAGGAAGTGAACATCTTTTAGCGTTGGTACTACAGGTACTAACTCAAGAGACGATGCCTTCGTCTGATCTGATTGCAACTGTTAAACATTTATATGAAACTAAACTGAAGGATGTGACGATTCTCATTCCAATGTTGTCCTCACTTTCCAAAAATGAGGTTTTACCTGTTTTTCCTCGGCTGGTTGATCTTCCATTGGAGAAGTTTCAGAGAGCGTTGGCTTACATATTACAGGGTTCGGCACATACACGCCCAGCTTTAACACCTGTTGAAGTATTGATTGCCATCCACAACATAATTCCTGAAAAAGATGGCCTTCCATTAAAGAAGATAACGGATGCTTGTTCAGCTTGTTTTGAGCAACGTACAGTTTTCAGTCAGCAGGTTTTAGCAAAAGCCTTGAGCCAGATGGTTGAACAAACTCCACTCCCTCTTCTCTTCATGAGAACTGTGATTCAGGCAATTGATGCTTTTCCTACTCTGGTTGATTTTGTCATGGAGATACTTTCCAAACTTGTAAACAGACAGGTCTGGAGGATGCCAAAATTGTGGTTTGGTTTTTTGAAATGTGCATTTCAAACACAGCCTCATTCCTTTCGAGTACTATTACAGTTACCACCGCCACAGCTTGAAAATGCTTTGAATAAATATGTTAACCTTAAAGGTCCTCTTGCTGCTTATGCCAGCCAGCCCAGCGCAAAATCTACTCTCTCTAGACCGACGCTCGTAGTTTTGGGTCTTGAAAATGAAAGGCATTTATAG 4194 42.49 MAGVLRERALSLLAAANNHGDLTVKISSLKQVKDIILAIEPSFAAELYSYLVELQSSPESLLHSARLDYLVVWCRINLNLNVVLPRGLCPRSGSFIELHSRDQGQFYRIRKFSRREMVIEDIGLRAMEHSPLLMSVLLTSLKDEESIVAGQSIISGQKLFCVTLREMTLQLYKLDANFRTPQLHRRGKVERWLEELWMRMLKFKDEVLAVAIEVCVCVVYAQNLNVCLQRNFPYKTCHTFPGSVGRRLLALKFLETYVLLFTSDTNDPQKAISEGSRDVFNISWLAGGFPILDPVGLMSEANRMLGVLLNLLQTSSVPGTYTVTVVSSLAAIARKRPVHYGNILSALLEFVPSFETIKGRHAASIQYSIRSALLGFLRCMHPAFVEFGFQSRDRLLKALRAINAGDAADQVIRQVDKMVKAADRASRDAWLGKDDQSSNQLNASVDLTRKRPRLLDDEELPNGREVSKQFRFGPDVHPIPTSQKDGSLQNATSNGTSHDVSTLDVELTPAEQMIAMIGALLAEGERGAESLEILISNIHPDLLADIVITNMKNLPKASPPLTWHGDLPVTRQGSSHVQVLAPSAPLSSVQTSVATAQVPFSSATSAGSTFAESTVSSLPIDSKRDPRRDPRRLDPRRGGVSSASSVEEASSNISDVDGSISLGKSASVPVSVTIENSSVSLISKTNVEEKIMETQFVFGTDQSTPKSRSPDRAEKADSILEINAPLDPMPTAVGKADDGLVAVNLFDDLATKRDDTSSSIEYNQYSPSVTNAAASEDTCEELPLLPPYVDLTPEQQTTVRNFAAEKIFDSCKNLNGADCQQIRLAIIARLVAQVGADDDIVRMLEKQVAVDYQQQKGHELALHVLYHLHSLDILDSVESSSFAVYEKFLLVVAKSLLDAFPASDKSFSRLLGDVPVLPDSTLELLHNLCYCDITDNQGKGSPDIERVTQGLGTVWNLIVKRPYSRQACLDIALKCAMHSEVKVRATAIRLVANKLYRLSYISDRIEQHATNMFLSAVNDVDQTDVEPSPYGSVEQRTGGEGESQETSVGGSQVSDLGTSENDSMKSSQPTVHGSSTLSLSEAERHISLLFALCMKKPCLLRFVFDAYGRAPRAVKEAVHEHIPNLITALGSSDSDLLRIISDPPPGSEHLLALVLQVLTQETMPSSDLIATVKHLYETKLKDVTILIPMLSSLSKNEVLPVFPRLVDLPLEKFQRALAYILQGSAHTRPALTPVEVLIAIHNIIPEKDGLPLKKITDACSACFEQRTVFSQQVLAKALSQMVEQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNRQVWRMPKLWFGFLKCAFQTQPHSFRVLLQLPPPQLENALNKYVNLKGPLAAYASQPSAKSTLSRPTLVVLGLENERHL 1397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30205706 30232907 + Lsi04G023050.1 Lsi04g02305 662354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 621 636 - -
Lsi04g02305 1397 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 241 1396 - -
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 449 465 - -
Lsi04g02305 1397 Pfam Symplekin tight junction protein C terminal 1182 1360 IPR022075 -
Lsi04g02305 1397 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 217 - -
Lsi04g02305 1397 Gene3D - 2 430 IPR011989 -
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 429 500 - -
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 611 658 - -
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 643 658 - -
Lsi04g02305 1397 Pfam Symplekin/PTA1 N-terminal 148 402 IPR032460 -
Lsi04g02305 1397 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 241 1396 - -
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 1023 1076 - -
Lsi04g02305 1397 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 217 - -
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 482 500 - -
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 1037 1076 - -
Lsi04g02305 1397 MobiDBLite consensus disorder prediction 432 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02305 K06100 SYMPK; symplekin - csv:101202828 2249.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01548 Lsi-Chr1:13651104 Lsi04g02305 Lsi-Chr4:30205706 4.15E-58 dispersed
Lsi01g01549 Lsi-Chr1:13665873 Lsi04g02305 Lsi-Chr4:30205706 2.68E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g566 . . . . . . . . . . . Cma09g00609 . . . Cpe06g00470 . . . . . . . . . . . . . . . Cone4ag1271 . . . Lsi04g02305 Csa03g04524 . . . . . . . . . . . . Cmo09g00597 . . . Car09g00540 . Cpe02g00494 Bhi09g02542 Tan01g3889 . . . . . Cla11g01454 Cam11g1507 Cec11g1545 Cco11g1540 Clacu11g1672 Cmu11g1488 Cre11g1908 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004558 1 4 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02305 Lsi_Chr04 FPKM 0.320686 0.698353 0.0 0.323303 1.721381 1.311957 2.337555 0.24162 0.118866 0.083898