Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02307 ATGTCGTCTCTACATTTTCTCTGCTTTCTCACTCTAATTTCAATCGCCTTTCTTCCTGGAATCAAATCTGACGACGAACGTCAAATCCTAACCAAACTCAAATCCTCTCTCCAAAATTCAAACGCCAATGTCTTCCACAACTGGGGACTCCAAAACCCCATCTGCAATTTCACTGGAATCGCCTGTAATTCAAATGGGTTCGTTAAGGAAATTGACCTCTCCAAACGGGGTTTATCTGGGGTTGTTCCTTTTGATTCCGTTTGCCAATTGCAAGCCTTGGAGAAGCTGGCTCTTCAATCCAATTCCCTGCACGGTGAAATTACAGAGGGTTTGAATAATTGTGTGAAATTGAAGTATTTGGATCTCAGTGGAAATTTCTTCTTTGGTTCTTTTCCCAACATACATTCTTTGAGTGAATTGGAGTATCTTTATTTGAATGTAAGTGGGATTTCAGGGAAGTTTCCATGGAAATCAGTGGGGAATTTGAGTGGTTTGATTGTGTTGAGCGTTGGGGATAACGCTTTTGAAAACACTACGTTTCCTGTGGAGGTTACTAATTTGAAGAACCTCAACTGGCTTTACTTGTCAAACTGCAGCTTAACAGGGGAAATACCAAGGTCTATAGGTAATCTCACGCAGCTTCTTAATTTGGAATTTTCAGATAATTCTATAACAGGGACTATTCCACCGGAGATTGCGAACCTGCAGAAGCTATGGCAGTTGGAATTCTACGGTAATCAATTAACGGGGACACTTCCAGTGGGATTAAGAAACCTAACCGAGCTTAAGAATTTCGATGCTTCCTTGAATCAAATTCATGGGGATTTATCAGAGTTGAGGTTTTTGACGAACCTGGTTTCTCTGCAAATGTTTGAAAATCAAATCTCCGGCGAAATTCCGGTGGAGTTTGGTGAATTCAAGTCGCTTGTAAATCTCTCCCTTTACAAGAACAAGCTCACAGGGCATCTTCCGCAATCGATTGGTTCTTGGACGGCGTTTGATTTCATAGATGTATCTGAAAATTTCTTGACGGGGTCGATTCCTCCTGATATGTGCAAGAAGGGGACGATGCGGAAGCTTCTCATTCTTCAGAACAATTTCACCGGTGAAATTCCGGCGACCTACGCTAATTGCTCCACTTTAACCCGATTTAGGGTCAGTAAAAACTCGCTCACCGGCGTCGTTCCGTCTGGAATTTGGGGATTACCGAACGTGAATATAATTGATCTCGTCTCGAATCAGTTGGAAGGTTCAATCACTCCCGATATTGGAAAGGCTGTGGCTCTCTCGGAATTATACATCGGAAATAACCGATTCTCAGGTCGATTGCCATTGGAGATTTCCCAAGCGAAATCTCTCGCTTCGGTTGACCTGAGCAATAATCAATTCTCTGATGAACTTCCGACGACTATTGGTGACTTGAAGAATCTCGATAGCTTCGAATTGCAGGGGAATAAATTTTCCGGTTCGATTCCAGAGACGATCGGCTTGTGTAATTCTTTGAGTATCGTCAATCTGGCGGAGAATTTCTTCTCTGGACAGATACCTTCGTCGCTGGGCTTTCTTCCAGTTCTAAACTCTTTGAATCTCTCCAATAACGACCTATCAGGTGAAATCCCCTCGACATTTTCGCATCTGAAATTGAGTTTTCTCGATCTTTCCAACAATCAATTAACCGGTCCAGTACCTCAAGCGCTCTCAAACGGAGCTTACAAAGAAAGCTTTGCCGGAAACCCTGGCCTCTGCAGTGAGGCCGATGACTTTATACGGCGATGTTCACAGAGTTCTGGCGCGTCGAAGGACGTCAAAACACTTGTCATCTGTTTCGCCATCGGATTAATTCTTCTCAGCGTGACGTTGTGGTGCTTCATAACCTTGAGAAAGAGCGGAAAAGATAGAGATTGGTCGCTTAAAGAGGAATCGTGGGACCTAAAATCATTCCACGTAATGACGTTCACAGAGGACGAAATCCTCGATTCCATTAAAGACGAGAATCTAATCGGAAAAGGAGGTTCCGGCAACGTTTACAAAGTGACCGTCGGAAACGGAAAAGAGTTCGCCGTGAAGCACATTTGGAACACCGATCCGTACGAGGGGAGGAAGAAGACTTACCGGAGTTCATCGCCGATTCTGGTGAAACAGAGAACGAAGTCGTCGGAATTTGACTCGGAGGTGAAGACTCTGAGCTCGATCCGCCATGTGAACGTGGTGAAGCTGTATTGCAGCATCACGAGCGAGGTTTCGAGCCTGTTGGTGTACGAATACATGCCAAATGGAAGCTTATGGGACAGACTTCACACGTCGAGAAAAATGGAGTTGGATTGGGAAACAAGATACGAAATTGCCGTCGGAGCGGCGAAGGGATTGGAGTATCTTCATCACGGCTGTGATCGGCCGGTGATCCACCGGGATGTTAAGTCGAGTAACATACTTTTGGATGAATTTCTGAAGCCCAGAATCGCGGATTTTGGTCTTGCCAAAATTCTTCACACAACTGGGTTCAACGAGACCAGCCATGTCATTGCAGGCACTCCGGGCTACATCGCACCAGAGTATGGATACACTTACAAAGTCGACGAAAAGAGCGATGTGTATAGTTTTGGAGTGGTATTGATGGAGTTAGTGAGTGGAAAAAAAGCAATAGATGCAGAGTTTGGAGAGAACAAGGAGATTGTTCAATGGGTATCGAAGAATTTGAAAACAAGAGAAAGTGTATTAAGCTTAGTAGATTCAAGAATTCCAGATGCATTTAAAGAAGATGCAATAAAGGTATTAAGAATTGCAATATTGTGCACAGCCAGGCTTCCCACTTTGAGACCCACAATGAGAAGTGTTGTTCAAATGCTTGAAGAAGCCCAACCTTGTCGCTTGCTTGGGATTGTCATTACCAAAGATGGTGGGACTCTTAAAAAGGAATTATCTTTGGATGTTAATAAGATTAGTCTCTAA 2949 43.81 MSSLHFLCFLTLISIAFLPGIKSDDERQILTKLKSSLQNSNANVFHNWGLQNPICNFTGIACNSNGFVKEIDLSKRGLSGVVPFDSVCQLQALEKLALQSNSLHGEITEGLNNCVKLKYLDLSGNFFFGSFPNIHSLSELEYLYLNVSGISGKFPWKSVGNLSGLIVLSVGDNAFENTTFPVEVTNLKNLNWLYLSNCSLTGEIPRSIGNLTQLLNLEFSDNSITGTIPPEIANLQKLWQLEFYGNQLTGTLPVGLRNLTELKNFDASLNQIHGDLSELRFLTNLVSLQMFENQISGEIPVEFGEFKSLVNLSLYKNKLTGHLPQSIGSWTAFDFIDVSENFLTGSIPPDMCKKGTMRKLLILQNNFTGEIPATYANCSTLTRFRVSKNSLTGVVPSGIWGLPNVNIIDLVSNQLEGSITPDIGKAVALSELYIGNNRFSGRLPLEISQAKSLASVDLSNNQFSDELPTTIGDLKNLDSFELQGNKFSGSIPETIGLCNSLSIVNLAENFFSGQIPSSLGFLPVLNSLNLSNNDLSGEIPSTFSHLKLSFLDLSNNQLTGPVPQALSNGAYKESFAGNPGLCSEADDFIRRCSQSSGASKDVKTLVICFAIGLILLSVTLWCFITLRKSGKDRDWSLKEESWDLKSFHVMTFTEDEILDSIKDENLIGKGGSGNVYKVTVGNGKEFAVKHIWNTDPYEGRKKTYRSSSPILVKQRTKSSEFDSEVKTLSSIRHVNVVKLYCSITSEVSSLLVYEYMPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCDRPVIHRDVKSSNILLDEFLKPRIADFGLAKILHTTGFNETSHVIAGTPGYIAPEYGYTYKVDEKSDVYSFGVVLMELVSGKKAIDAEFGENKEIVQWVSKNLKTRESVLSLVDSRIPDAFKEDAIKVLRIAILCTARLPTLRPTMRSVVQMLEEAQPCRLLGIVITKDGGTLKKELSLDVNKISL 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30266100 30270313 + Lsi04G023070.1 Lsi04g02307 662356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02307 982 Gene3D Ribonuclease Inhibitor 179 280 IPR032675 -
Lsi04g02307 982 SUPERFAMILY L domain-like 36 352 - -
Lsi04g02307 982 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lsi04g02307 982 Pfam Protein kinase domain 663 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02307 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Lsi04g02307 982 Gene3D Transferase(Phosphotransferase) domain 1 756 956 - -
Lsi04g02307 982 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524
Lsi04g02307 982 SUPERFAMILY RNI-like 317 568 - -
Lsi04g02307 982 Gene3D Ribonuclease Inhibitor 23 178 IPR032675 -
Lsi04g02307 982 Gene3D Ribonuclease Inhibitor 281 352 IPR032675 -
Lsi04g02307 982 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 963 - -
Lsi04g02307 982 SUPERFAMILY Protein kinase-like (PK-like) 652 950 IPR011009 -
Lsi04g02307 982 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515
Lsi04g02307 982 Pfam Leucine Rich Repeat 116 133 IPR001611 GO:0005515
Lsi04g02307 982 Pfam Leucine Rich Repeat 189 211 IPR001611 GO:0005515
Lsi04g02307 982 Gene3D Ribonuclease Inhibitor 468 589 IPR032675 -
Lsi04g02307 982 Gene3D Ribonuclease Inhibitor 353 467 IPR032675 -
Lsi04g02307 982 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 7 963 - -
Lsi04g02307 982 SMART serkin_6 661 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02307 982 ProSiteProfiles Protein kinase domain profile. 661 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02307 982 Gene3D Phosphorylase Kinase; domain 1 644 755 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02307 Lsi-Chr4:30266100 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi04g02307 Lsi-Chr4:30266100 Lsi04g02309 Lsi-Chr4:30282321 0 proximal
Lsi01g01030 Lsi-Chr1:8501519 Lsi04g02307 Lsi-Chr4:30266100 2.93E-28 transposed
Lsi02g01188 Lsi-Chr2:14953057 Lsi04g02307 Lsi-Chr4:30266100 1.76E-78 transposed
Lsi03g00641 Lsi-Chr3:7993942 Lsi04g02307 Lsi-Chr4:30266100 0 transposed
Lsi06g01606 Lsi-Chr6:26428106 Lsi04g02307 Lsi-Chr4:30266100 1.64E-14 transposed
Lsi08g00609 Lsi-Chr8:14427553 Lsi04g02307 Lsi-Chr4:30266100 0 transposed
Lsi03g01283 Lsi-Chr3:23660770 Lsi04g02307 Lsi-Chr4:30266100 9.34E-07 transposed
Lsi04g02307 Lsi-Chr4:30266100 Lsi08g01054 Lsi-Chr8:19156987 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83617 PF00069 Pkinase 1.60E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02307 - - csv:101223100 1670.6