Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02309 ATGGCTCTCCTTTTCTTCTTCTTCTTTCTTCACTCTTTGATTTCTCTAGCCATTGGAACTGACCAATCTCAGTTTTTCTCTTTCATGCAAAAGGGTGTCATCGGGAATTCTCTGCCATCCGATTGGACTGGAAATTCCTTCTGTAATTTCACCGGAGTTAGCTGTAATGAAAAGGGGTCAGTGATCGGAATTGATCTCTCAGGCAGGTCGGTTTCCGGGAGGTTTCCGGCGGATGTTTGTTCTTATTTACCGGAGTTGAGAGTGCTGCGCCTTGGACGGAGTGGCTTACGTGGAACCTTTCCACGTGGGATAACGAATTGCTCTGTTTTGGAAGAATTGGATATGAGTTTTCTGTCACTGACTGGGACGTTACCGGATTTCTCGCCGTTGAAAACCTTGAGGATTCTCGACATGTCGTACAATAATTTCACTGGTGAATTCCCGTTGTCGGTCTTCAGTTTAACGAATCTCGAGAGATTGAATTTCAACGAGGACAACAATTTCAACACGTGGCAGTTGCCGGAGAATATCTCCGGTTTGACGAAGCTGAAATCGATGGTGTTAACGACTTGTATGCTGGAGGGTCGAATTCCGGCGACGATTGGGAATATGACGGCGCTCGTTGACCTTGAATTAAGTGGTAACTTCCTCACCGGAAAAATCCCAAGAGAAATCGGGAATCTGAAGAATTTGAGAGATTTGGAGCTTTATTACAATTCATTAGTCGGAGAAATTCCAGAGGAACTTGGTAACTTAACAGAGCTCGAGGACTTGGACATGTCGGTCAACAAGTTGACTGGGAAACTTCCAGAGTCGATTTGTCGTCTTCCTAAGCTTCAAGTTCTTCAGCTTTACAACAACTCCTTAACAGGGGAGATTCCAATTTCAATTTCAAATTCAACGACACTCACTATGTTATCCCTTTACGACAACTACATGACGGGACAGGTTCCAAGTAACTTGGGTCAATTCTCGCCTATGGTGGTTCTCGACTTGTCGGAAAATTATTTCTCCGGTCCTTTACCGACAGATGTCTGTGGAGAAGGTAAATTAATGTATTTCCTTGTGTTGGAAAATAAATTTTCCGGTCAAATCCCACCGTCGTACGGTAAATGCCAGTCCCTTTTACGGTTTCGAGTCAGTTCGAATATTTTGGAAGGTCCGGTGCCGGTGGGACTTTTGAGTCTTCCTCATGTTTCGATTATTGATTTCGGTAACAATAATTTGACCGGTGAAATTCCCAACTCTTTTGTTAAAGCGAGGAATCTATCGGAATTGTTTATGCAGAGTAATAGGATTTCCGGCGTGTTGCCGCCGGAAATTTCTAAAGCTACCAATTTAGTTAAGATTGATCTTAGCAACAATCACTTGTCTGGTCCAATTCCTTCTGAAATTGGGAATCTCAGGAGGCTTAATTTGTTGCTTTTGCAAGGAAATCACTTGAATTCTTCAATTCCCACTTCACTTTCTGAGCTTAAATCTCTTAATGTTCTTGATTTATCTGATAATCGACTAACGGGTAACATCCCAGAAAGTCTATGTGAATTGCTGCCGAATTCAATCAATTTCTCAAACAATCAACTCTCTGGTCCAATTCCTCTGTCTTTAATCAAAGGTGGATTAGTGGAAAGCTTTTCCGGCAACCCAGGACTGTGCGTTTCGGTTTATTTAGATTCATCAGATCAGAAATTCCCAATTTGTTCTCAAAACTACAACAAAAGGCGATTGAATTCCATCTGGGCAATCGGAATATCGGCGTTGATAATCTTCATCGGAGCTGCTCTGTATTTAAGGCGACGATTCAGCAGAGAAAAATCAGTAATGGAACAAGACGAAACACTGTCATCATCGTTCTTCTCATACGATGTGAAAAGCTTCCACCGAATCAGCTTCGACCCAAGAGAGATAATCGAATCAATGGTGGATAAGAACATCGTCGGCCACGGCGGGTCCGGTACAGTGTACAAAATAGAGCTAAGCAGTGGGGAAATCGTAGCCGTTAAAAGGCTGTGGAGTCGAAAGGGAAAAGATACGACGTCGGATCAAGAACAGTTGTATTTGGACAAAGAACTGAAAACAGAAGTTGAAACATTAGGGAGTATAAGGCATAAAAACATAGTGAAATTATATTGCTATTTCTCAAGCTTGGATTGCAGCTTATTGGTTTATGAGTATATGCCAAATGGGAATTTATGGGATGCTTTGCATAAGGGTTGGATTCATTTGGATTGGCCAACCAGACATCAAATTGCTTTGGGCATAGCCCAAGGCCTGGCTTATCTTCATCATGATTTGTTACCTTCCATAATTCATAGAGACATTAAAACCACTAATATTCTATTGGATGTGAATTATCACCCTAAAGTTGCAGATTTTGGCATTGCTAAGGTTTTGCAAGCTAGAACTGGCAAGGATTCCACCACCACCGTCATCGCCGGCACTTATGGCTACCTCGCTCCCGAGTATGCATATTCATCAAAAGCGACGACAAAGTGCGACGTGTATAGCTTTGGAATCGTGTTGATGGAGCTAATAACAGGGAAGAAACCAGTGGAAGCAGAGTTTGGAGAGAACAAGAACATCATATACTGGGTTTCAAACAAAGTAGATACAAAGGAAGGAGCGATGGAAGTATTAGACAAAAGAGTTTCAGGATCATTCAAAGATGAGATGATTGAAGTTTTAAGGATTGCAATTCGTTGTACATACAAGAATCCAGCCCTTAGACCCACCATGAAGGAAGTGGTTCAGCTCTTGATTGAAGCTGACCCTTGCAAATTCGATTCTCATAACAAATGTCCCAAACAAACCACCACTAAAATCAACAACCCATTTGACCTATGA 2844 42.02 MALLFFFFFLHSLISLAIGTDQSQFFSFMQKGVIGNSLPSDWTGNSFCNFTGVSCNEKGSVIGIDLSGRSVSGRFPADVCSYLPELRVLRLGRSGLRGTFPRGITNCSVLEELDMSFLSLTGTLPDFSPLKTLRILDMSYNNFTGEFPLSVFSLTNLERLNFNEDNNFNTWQLPENISGLTKLKSMVLTTCMLEGRIPATIGNMTALVDLELSGNFLTGKIPREIGNLKNLRDLELYYNSLVGEIPEELGNLTELEDLDMSVNKLTGKLPESICRLPKLQVLQLYNNSLTGEIPISISNSTTLTMLSLYDNYMTGQVPSNLGQFSPMVVLDLSENYFSGPLPTDVCGEGKLMYFLVLENKFSGQIPPSYGKCQSLLRFRVSSNILEGPVPVGLLSLPHVSIIDFGNNNLTGEIPNSFVKARNLSELFMQSNRISGVLPPEISKATNLVKIDLSNNHLSGPIPSEIGNLRRLNLLLLQGNHLNSSIPTSLSELKSLNVLDLSDNRLTGNIPESLCELLPNSINFSNNQLSGPIPLSLIKGGLVESFSGNPGLCVSVYLDSSDQKFPICSQNYNKRRLNSIWAIGISALIIFIGAALYLRRRFSREKSVMEQDETLSSSFFSYDVKSFHRISFDPREIIESMVDKNIVGHGGSGTVYKIELSSGEIVAVKRLWSRKGKDTTSDQEQLYLDKELKTEVETLGSIRHKNIVKLYCYFSSLDCSLLVYEYMPNGNLWDALHKGWIHLDWPTRHQIALGIAQGLAYLHHDLLPSIIHRDIKTTNILLDVNYHPKVADFGIAKVLQARTGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGIVLMELITGKKPVEAEFGENKNIIYWVSNKVDTKEGAMEVLDKRVSGSFKDEMIEVLRIAIRCTYKNPALRPTMKEVVQLLIEADPCKFDSHNKCPKQTTTKINNPFDL 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30282321 30286204 + Lsi04G023090.1 Lsi04g02309 662358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02309 947 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Lsi04g02309 947 ProSiteProfiles Protein kinase domain profile. 640 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02309 947 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 938 - -
Lsi04g02309 947 Gene3D Transferase(Phosphotransferase) domain 1 726 939 - -
Lsi04g02309 947 PRINTS Leucine-rich repeat signature 447 460 - -
Lsi04g02309 947 PRINTS Leucine-rich repeat signature 492 505 - -
Lsi04g02309 947 Gene3D Phosphorylase Kinase; domain 1 623 725 - -
Lsi04g02309 947 SUPERFAMILY RNI-like 63 340 - -
Lsi04g02309 947 SUPERFAMILY L domain-like 245 560 - -
Lsi04g02309 947 SUPERFAMILY Protein kinase-like (PK-like) 627 919 IPR011009 -
Lsi04g02309 947 Gene3D Ribonuclease Inhibitor 353 562 IPR032675 -
Lsi04g02309 947 Gene3D Ribonuclease Inhibitor 64 352 IPR032675 -
Lsi04g02309 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Lsi04g02309 947 SMART LRR_typ_2 83 107 IPR003591 -
Lsi04g02309 947 SMART LRR_typ_2 130 154 IPR003591 -
Lsi04g02309 947 SMART LRR_typ_2 492 516 IPR003591 -
Lsi04g02309 947 SMART LRR_typ_2 228 252 IPR003591 -
Lsi04g02309 947 SMART LRR_typ_2 276 300 IPR003591 -
Lsi04g02309 947 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Lsi04g02309 947 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 5 938 - -
Lsi04g02309 947 Pfam Protein kinase domain 642 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02309 947 SMART serkin_6 640 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02309 Lsi-Chr4:30282321 Lsi08g01054 Lsi-Chr8:19156987 0 dispersed
Lsi04g02307 Lsi-Chr4:30266100 Lsi04g02309 Lsi-Chr4:30282321 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83618 PF00069 Pkinase 1.40E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02309 - - csv:101222864 1767.28