Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02311 ATGTCTGCTCCATTGACTCCCTCAAAGAGATCACGTGATCGAAGCTTTGTCAAGTCTAATGGGAAACGAAAGTGGCATAAGTCATCAGTTTCTCGTTCTCAAAATCAATCCTTCAAATTGTCTCCTGGCTATGCTGTCTTTCGTGTCCTCTTTCCTGTTTCCAGAATTGGCAGCCTTGTAGGTAGAGATGGGGATGCTTTATCTAAAATTCGTGAAGAAACAGGTGTAGAAATCAGAGTAGAGGACACTGTCTCTGGATGTGATGAGAGAATTGTAGTAATTGGAGGCTCTAATCAAGAAACTGAAGTGAACACTGAGCAGAAGAGTAAGGAAGACAACAAAAATTCTGAAGTCGAGGAGAATGATGGTGATATTGCCAAGTTGAAAAAGAAGGAAGATAAAGATTCTCCTCCTGTGGAAGATGCTAAACAAAAGGAGGTTTCTTATTTGCAATTGCAAAAAGCCCTCTTTCTTGTTTCTGAGAAGATCTTTGATGAAGAGCCGGAGGCAGATGGGACAGATGTTGAAGGTGATAAGCTGTCTACATTTGTCTTAAGATTGCTCGTTCTTTCTAGTCAAGTTGGGTGCCTATTGGGAAAGGGTGGCAGTGTAGTCAAACAAATGTCATCTGATAGTGGAGCGCAAATTAGAATTCTTCCTAGGGATAAACTTCCTCCGCTTGCAACGACCAATGATGAGCTAGTCCAGGAACAAGAATTAAAGCATTTTATGGAATTCTATTGCCTGACTGCTGGTCCTGCCACAACTGCAGTTTTGGATTTAGGCGACGTTCAATTATTTGTCTCATACTGTCATTGGAAAAAAAATAGTGGTTTAAGGAGGCGACATGCCTTGGAGTTGGATTTCTTGGGCAACACCCAAGCAAAAGATTTGTTCAGTTTCCAGTGCCTGATCTTTATTTACACTTTTATTTTGATGACATGGATGCAGATTAGTGGAGGAACTGATGTGGTGAAGAAAGCTCTTGAACTTGTTTTTCAGCAGCTAATGGAAAATTCACCCAAAGATAAAGATCCTGTTGCCTCAAGCAATGCACAGTCATCACATTCTTCTGGACAGTCTCTCTCTAGGGCTCATGAATCTCCTCTGGGTAGTAGTTCTTTTAATACTCATGGAGGCCCTTACTCTGTGCCTCGTGATGTTGGCAATTTTTATTCCAGTGCACCTTCTCTTGCTCCTAAACAGTATGAAAGCAGCATTCCTGGTCGAAGTAAACCTTCTCATGAAATTTTAAGCTATCGTTTATTATGCCCATCTGAGAGAGTTGGAAATGTGATTGGAAAAGGAGGGGCAGTAGTTAAGACTCTTCAGCAAGACACAGGCTGTGACATCAAAGTTGTTGAAGGTGCCTTGGACTCAGAAGACCGCATTATACTTGTAGCCGGTCCTGCGCCTGTTACTAGATTTTTTTTCATTAATGTTCCGAGACCGCATCCAGACGACAGAATATCACCAGTGCAAGATGCTGTTTTTCGCGTTCAGGCCAGGATTGTCAAGGCCGTACCAGAGAGCAAGGAGCAGAACTTGGTAGCTAGGTTTCTTGTTTCATCCAATCAAATTGGTTGTCTTCTTGGGAAGGGTGGCTCCATCATATCCGAAATGAGAAAGTCGACTGGTGCATATATTCGTATTTTAGGAAAGGATCAGATTCCAAAGTGTGCTGGGGAGGATGAAGAAGTGGTTCAGATAAATGGAGAGCCTGAAACAGTTCAAGATGCTATGTTGCAGATTACTACTCGGCTGAGGCATCATTTTTTCCGTGATGCATTTCCATCAGTTAATAGTCATCTGAATCCTGCATTCATAGATAGACTTCCTTCATTTCCTTCATATTTTGGAAGGAGAGAATTGTCACCTCCAGGAATCTATTCAAGTTTAGGCCCCTCATTTCACAAGTTTGATGCTCTTAGTGCCATTCCTTCACTTAGTGATTTGCGGGATGATCGACCTCCTTTTCTTCATAGGTCAGGTGCTCCTCTGTTATCTGATAGAAAACCATGGAGCTCTCAGTTTCTCAACGAATCATCCAAAGGATTAGTTGAAGGTGGTGTTGGCTTGTCAGACTTTGCAGGAGCCCATCATAGAAGACTTGCTGGATTTGGAGGAGGAAATAATCCAGCTATTATTACGAGCACCACTGTTGAAGTAGTTGTTCCTCGAAACCTTGTCCCTATTATTTGTGGAGAAAATGGTGAATGTTTGAAACAGATTCGTCAGAAAGGAGGAAAAAAAAATGCCCTAGACCAGTTATTTGTGAGCTTGACCTCAATGTTTGTTTTCTTTTTAATATTTTTGGATCTTGAAAGTGAACCCGTCCATTCACGGATGGATGTCATGTATGCTTTAGTTGCCTTTTCTAAAATACGAAAGGAGACCTCCAATACTAATCTACTGAAATGTGGATATTTATTTCATTGCCACAGCTATCTCACAGGACACATCTTTCTTATTTCTGATGCAAAAATTACAATTACCGAGCCAAAGCAAGGAGAACTTGAAACTATGATTATAATTTCTGGAACGCCTGAGCAGACCCATGCTGCTCAGAGTCTTATTCAAGCTTTTGTAATCAGTGAGACTGAGTCTAGTTGA 2613 41.41 MSAPLTPSKRSRDRSFVKSNGKRKWHKSSVSRSQNQSFKLSPGYAVFRVLFPVSRIGSLVGRDGDALSKIREETGVEIRVEDTVSGCDERIVVIGGSNQETEVNTEQKSKEDNKNSEVEENDGDIAKLKKKEDKDSPPVEDAKQKEVSYLQLQKALFLVSEKIFDEEPEADGTDVEGDKLSTFVLRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPLATTNDELVQEQELKHFMEFYCLTAGPATTAVLDLGDVQLFVSYCHWKKNSGLRRRHALELDFLGNTQAKDLFSFQCLIFIYTFILMTWMQISGGTDVVKKALELVFQQLMENSPKDKDPVASSNAQSSHSSGQSLSRAHESPLGSSSFNTHGGPYSVPRDVGNFYSSAPSLAPKQYESSIPGRSKPSHEILSYRLLCPSERVGNVIGKGGAVVKTLQQDTGCDIKVVEGALDSEDRIILVAGPAPVTRFFFINVPRPHPDDRISPVQDAVFRVQARIVKAVPESKEQNLVARFLVSSNQIGCLLGKGGSIISEMRKSTGAYIRILGKDQIPKCAGEDEEVVQINGEPETVQDAMLQITTRLRHHFFRDAFPSVNSHLNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSAIPSLSDLRDDRPPFLHRSGAPLLSDRKPWSSQFLNESSKGLVEGGVGLSDFAGAHHRRLAGFGGGNNPAIITSTTVEVVVPRNLVPIICGENGECLKQIRQKGGKKNALDQLFVSLTSMFVFFLIFLDLESEPVHSRMDVMYALVAFSKIRKETSNTNLLKCGYLFHCHSYLTGHIFLISDAKITITEPKQGELETMIIISGTPEQTHAAQSLIQAFVISETESS 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30332948 30337615 - Lsi04G023110.1 Lsi04g02311 662360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02311 870 Gene3D K Homology domain, type 1 45 107 IPR036612 GO:0003723
Lsi04g02311 870 MobiDBLite consensus disorder prediction 104 142 - -
Lsi04g02311 870 Pfam KH domain 185 232 IPR004088 GO:0003723
Lsi04g02311 870 Pfam KH domain 47 100 IPR004088 GO:0003723
Lsi04g02311 870 Pfam KH domain 518 584 IPR004088 GO:0003723
Lsi04g02311 870 Pfam KH domain 420 470 IPR004088 GO:0003723
Lsi04g02311 870 MobiDBLite consensus disorder prediction 95 145 - -
Lsi04g02311 870 MobiDBLite consensus disorder prediction 1 37 - -
Lsi04g02311 870 CDD PCBP_like_KH 46 97 - -
Lsi04g02311 870 Gene3D K Homology domain, type 1 417 508 IPR036612 GO:0003723
Lsi04g02311 870 CDD PCBP_like_KH 184 236 - -
Lsi04g02311 870 Gene3D - 125 243 - -
Lsi04g02311 870 ProSiteProfiles Type-1 KH domain profile. 718 749 - -
Lsi04g02311 870 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 316 651 - -
Lsi04g02311 870 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 236 - -
Lsi04g02311 870 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 316 651 - -
Lsi04g02311 870 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 236 - -
Lsi04g02311 870 CDD KH-I 720 749 - -
Lsi04g02311 870 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 222 IPR036612 GO:0003723
Lsi04g02311 870 SMART kh_6 181 248 IPR004087 GO:0003676
Lsi04g02311 870 SMART kh_6 43 113 IPR004087 GO:0003676
Lsi04g02311 870 SMART kh_6 717 864 IPR004087 GO:0003676
Lsi04g02311 870 SMART kh_6 514 589 IPR004087 GO:0003676
Lsi04g02311 870 SMART kh_6 416 509 IPR004087 GO:0003676
Lsi04g02311 870 ProSiteProfiles Type-1 KH domain profile. 44 110 - -
Lsi04g02311 870 MobiDBLite consensus disorder prediction 344 379 - -
Lsi04g02311 870 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 718 864 IPR036612 GO:0003723
Lsi04g02311 870 Gene3D K Homology domain, type 1 716 866 IPR036612 GO:0003723
Lsi04g02311 870 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 412 471 IPR036612 GO:0003723
Lsi04g02311 870 CDD PCBP_like_KH 419 501 - -
Lsi04g02311 870 ProSiteProfiles Type-1 KH domain profile. 182 218 - -
Lsi04g02311 870 Gene3D K Homology domain, type 1 512 592 IPR036612 GO:0003723
Lsi04g02311 870 CDD KH-I 825 860 - -
Lsi04g02311 870 ProSiteProfiles Type-1 KH domain profile. 417 472 - -
Lsi04g02311 870 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 510 595 IPR036612 GO:0003723
Lsi04g02311 870 MobiDBLite consensus disorder prediction 340 379 - -
Lsi04g02311 870 ProSiteProfiles Type-1 KH domain profile. 515 584 - -
Lsi04g02311 870 CDD PCBP_like_KH 517 585 - -
Lsi04g02311 870 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 99 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02311 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101221201 739.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02311 Lsi-Chr4:30332948 Lsi05g00112 Lsi-Chr5:1846754 2.19E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02311 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.101498 0.253081 0.284867 0.0 0.067692 0.0