Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02317 ATGACGATGGAATTCCATCTGACGAAAACATACCATGATGGACTTCTTAAATTACAAGCAAAAGAATATGAAAAGGCTCGTGAATTGTTAGAATCCGTGCTCAAGGATCATTTGATAGCATCTGCACAGGTTGATGGTGAAGCTGGTGATAATCATCTACTGCAACTCAGATTCTTAGCACTTAAGAATCTTGCCACTGTATGTCTACAACAGGGATCTGCTCATTATGAGGGTGCTCTGCATTGTTATCTTCAAGCCGTGGAAATTGATTCTAAAGATTCTGTTGTTTGGAACCAGCTGGGGAACTGCATGGAGAAGCTATTGGAAGTTCTAATTGCAATACGTGATGAGGTTGCCTGTCTTTCTGTAGCAGAATTGATTTTGAGGCACTGGCCATCACATGCTCGTGCTTTGCATGTGAAACTTACCATTGAAGAGTCAGAATCCATTCCATATGCACCCAAAGGTATTGATAAGCTAGATCCAAAACATGTCCGACTCAAATTTATTGATAAGAGGAAGGCTGGTGAAGAGGATCTTGATGAAGTCCTCAAAGTTAAAAGGACAAACCAGAATATAGATCTCCACCTAGCAGAAGTTTCCTGGGTTGGTCTTGTTGATGCACTCCTAGATATCTTACTTCCATTGAGCGGATGTGGGTCTGAGGTGCAGGTTGAAAAACCACTTAAATCTGGTGATGTTAGATTAAAAATATGCTTAACTCCCAGTTCAGATCGTAGCAGTGCATTTATGGAGAGGAAAGAGCTTGTTTCTACCTTCATTTGTGATAATACATCTCTTGCAGATTCTAATACAGAAAGTTCATCCTCTTTTAAGGAAAAAGAGGCAAGTGGTTTAGATGAACATCCACAAGAGCGGCGTAGTACTCGTCTTGAAAGGCTAAGAAGTCGTAAGCCTGGAAAAGAAGAATTAGATTATTTGACAAGTAAAGATCTGGCAAGGGTTGTAACTCAGTATCTAGAACCCTTTATTTCCAGTGGATCGGGAACCAAAGATACCGACCATGAGACCAGGAATTCTGTTTCCTACCCTGATGGGGAGAATTCACGGGGTTCAGACCGCAATGATGTTCATAGAAGAAAAGATGCAGGGATTACTTCAGTAGAACTTGCAGCAATTGATGTTTTAATAAAATCATGTGAGAAGGAAAATCATTTGGATATTGAGATACTTTTGAATTCTCACCAACGGAAGCTGCAAATACTCATGGCAGCTGCTGGAATGCACGAATACTTTACATCAAATAAATCATTTCGTGAGAAGTCAGAGGCAAAACCACGTTCTGACATAGAAACGAAGGATAGTCCAAGCAGTCACTTGAATCATCTAGTCGCAGAAGAAGTAAAAGCAATATCTCAATGTATATCACAAGTAAAGAACTCCATTGAACATTCTGAAGGCTCTGTTGAGTTAATTGTTGCAACTCATGACCTACTTGCAGAATATGGTCTCTGCTGTTGGGGCGAGGGTGAAGGGGAGGAAGGAAAATTTCTTAAGTTTTCCATAAAGCATCTCTTAGCTTTGGATATGAAACTTAAATTGAACAGTTCGGTAAATGGGAAAAAAATTGAATGTGATGACATGGAATGGGAGAATTGTCAGGTAAAGGCATCTCCAGACCGTTCAAAATTGAATGCTCAAGATTTGGGGTTGAGTCAAAATGATGAAACCAGATCCATGGTCAAGGATGCTGGGGAGGATATAACACGGGAAGGCATGTCAACTCATAAATCAATATTGAAAGATGCTACAGAAGGAGAATTTATTAAGCAAGAAAGTGAGGAGTCTGTTGGCAAGTTCAATGCTGGTGAAAATAATAGTGACCACCTCGTAGAATGTGAGAATGAGCAAAATGAAGATGAAAAGGAGGAGCTAGAATTAAAAATCGAAAGTTCATTGGATCAGTGCTTTTTCTGCTTGTACGGGTTAAACCTCAGATGTGACTCATCTTATGATGATGATCTATCTGTACATAAAAATACTAGCCGTGAGGATTATCAGACCAAAGAACAGTGTGCTGACGTTTTCCAAACTGGATTAGTCAAGCTGCGAAGAGTTCTAAGAGCCATCCGCAAACACTTTCTAAAACCACCAGAGGATGTATTGGATGGAAATGTGATAGACAAGTTCTTAGATGATCCCAATTTATGTGAAGAAAAACTCTCTGACGAAGCTGGTTCAGATGAGTTTCTTGTAACAATGACAAACATATTACTTAATGATGTAGGAAGCATTAAACAGTATCGAACATCAGTCTTAGGAAGTTCTGAACCATATTTGGAAGTTTATAGCAACTTGTATTATTTCCTTGCTCAATCCGAGGAAATGAGTGCAACGGACAAATGGCCAGGTTTTGTGCTCACCAAGGAAGGGAAGGAATTTATACAACATAATGCAAACCTCTTCAAATATGATCTACTGTATAATCCTCTGCAATTTGAGAGCTGGCAAAAACTTGCACATATTTATGATGAGCATGAGATACATGAGCTATTAGCACTTGTGTACTACGACAGCCTGCAAAATGTGGTTCCATTTTATGATCAGCGATCTGTGATGCCACCGAAGGATGAAGCATGGCTCAGAGTTTGTGAGAACTCGTTGAAACATTTCAAAAAAGCTTTTGCACATCAGCAAGACTGGTCTCATGCATTCTATATGGGCAAACTTAGTGAAAAGCTCGGGCTCTCACATGATAAAGCTCTATCATATTACGCTGAAGCTATTGCCTTAAATCCATCAGCCGTTGATTCTATTTACAGAATGCATGCATCACGCTTAAAATTTCTTGGTAATTGTGGAAAAGGGGATCTGCAGGCTTGGAAGGATCTTTCAACTTATGCCTTTAACCAGTCAACTAGAGATGCTGTGATGGATATATCAAGTAAGTTTGGTCCCAAGACTTCGGATTTACCTACAGACGTGGATGGCCATGAAGCATATTCTGAGGATATAAAGCATGATGAATTCCTCAAAGTGGAAAAGGCGTGGCACATGCTTTATAATGATTGTCTTTCTGGTCTTGAAACTTGTGTTGAAGGGAATCTTAAACATTATCATAAAGCCAGATATACACTTGCTCGGGGTCTTTATAGAAGGGCTGAGAAAGGTGATGTGGACAAAGCAAAGGATGAGCTCTCATTTTGTTTTAAATCATCTTGTTCATCCTTTACAATAAATATGCGCAAAGCACCTGGTCTTTCGGGGAATAGGAAAGCACTTGAAGTTAATTTACCAGAAAGTTCTCGGAAGTTTATTACATGTATTAAGAAGTACTTGTTGTTTTATTTGAAACTACTGGAGGATACTGGAGATATCTGTACCCTTGAGCGTGCTTATATATCACTTCAAGCAGATAAAAGGTTCGCATTGTGCATTGAAGATCTTGTTCCAGTTGCTCTAGGGAGGTATGTCAAGGTTTTGATTACGTTCATTCGTCAAGTCGGGATTGCTAGCTCTGGTGATGCGAGCGGTTACGAACATATACTAGAGAAAATGTTTGCTCTGTTCGTGGAGCAGGGTAACCTATGGCCAGAATTGTGCAGTTTGCCTGAAATACAAGGCCCGGTGTTGCAAATTGCCATAGTCTTGGCACTGATCACTCCTGTACTTTCTGAATCCTCTACCGAAAGTCAGACGTCAAGTTCATTACCTGGTGGTTTAGAAAGTAACCAACTTCTTTGTGTGGATTTGCAAATTAATGAATTATCGAGTTCAACATTTGAGGACTCAACACATCTGAAAAGTCTTGAACCAAAATGGTGCCCAATCTTGTCCAAAATCAATAACATGTTTGTTAAAAGAGCCGCAGAAGTGAATTGGGAAACTGCTAACTCTTTGCTTCGATCTTGTTACAATTTTTTTCGTGAGAGCTCCTGTATGCTCCCATCTGGCTTGAACCTGTATCTAGTTCCATATCGACTAGCAACAGGAGCAAACTTTCAACAGCGCATGGATGGGATTGAAATTTTAGATTTCAGCATGCCAAGGAAGCTTCTCTTGTGGGCGTACACCCTAGTGCATGGTCATTTTGCTAATATTTCATCGGTGGTGAAGCATTGTGAAGAACATCTGAAGACTCCTGTGCCTCCACCTTGTATGCAGTTACAGGCATTGGAAGAGATGGTTCAAACCACAGTGGGGAAACAAATGCAGAAGCATCTCCACTCACCCTCGTTACATCTACTTCATTGCCAGAGAATCAGACCACGAGCAGTTCAATTCTGCTTCTTTCGAGTGGCGACACTCGCAGAAGTTCATTTCATGGCCCCCAATTTCAACAATGTAGCAATATTGTTGCTGAGAGAATACCTAATGGAGGAGATTCAGACAAAGGATGACAGTCCAGCACTTCCTCGGAATATCAAATTTGGCGATAGCTTCCATTTTGGTTCCGCCATTCACAGTTGGATTGGAATGGGAAGTAAAGCTCTTCCTCTGCTCAAAGGAGCTTCATCATTCCCATCGTTTAAGCGCCAAATCTTCATCTCTACCGCCTTGCATTCCCTACCTGTTTCTAACATCACAATTCGAAAATGTTCAACTGCTTCAGGAATTTTGGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCTCTCACTCCCACTCAGGTTGAAGAATTTGCGCCTAAAATTAGACAAGTTGTTGACTGGTTTGGGCAGCTCCAGACCGTTGATCTTCAAAGTATTGAACCATCCATTAGAGCAGATGCTGAAGGTGGCAATCAGAGGAATGACGTTCCTCAAACATTTGAAAATAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAAAGTTCCTAAAACTTGTCTCTTAGCCTTGGGATATTACAAGGCATGGCTTCGCTGGGTCCATTGGTTACCTTACAGAGGAATATATACAAGGGCAGGGCAGATGCAGGTGGGCAGGGCAGGACAGTCTTGGGTCCCAATGGAGTAA 4992 40.95 MTMEFHLTKTYHDGLLKLQAKEYEKARELLESVLKDHLIASAQVDGEAGDNHLLQLRFLALKNLATVCLQQGSAHYEGALHCYLQAVEIDSKDSVVWNQLGNCMEKLLEVLIAIRDEVACLSVAELILRHWPSHARALHVKLTIEESESIPYAPKGIDKLDPKHVRLKFIDKRKAGEEDLDEVLKVKRTNQNIDLHLAEVSWVGLVDALLDILLPLSGCGSEVQVEKPLKSGDVRLKICLTPSSDRSSAFMERKELVSTFICDNTSLADSNTESSSSFKEKEASGLDEHPQERRSTRLERLRSRKPGKEELDYLTSKDLARVVTQYLEPFISSGSGTKDTDHETRNSVSYPDGENSRGSDRNDVHRRKDAGITSVELAAIDVLIKSCEKENHLDIEILLNSHQRKLQILMAAAGMHEYFTSNKSFREKSEAKPRSDIETKDSPSSHLNHLVAEEVKAISQCISQVKNSIEHSEGSVELIVATHDLLAEYGLCCWGEGEGEEGKFLKFSIKHLLALDMKLKLNSSVNGKKIECDDMEWENCQVKASPDRSKLNAQDLGLSQNDETRSMVKDAGEDITREGMSTHKSILKDATEGEFIKQESEESVGKFNAGENNSDHLVECENEQNEDEKEELELKIESSLDQCFFCLYGLNLRCDSSYDDDLSVHKNTSREDYQTKEQCADVFQTGLVKLRRVLRAIRKHFLKPPEDVLDGNVIDKFLDDPNLCEEKLSDEAGSDEFLVTMTNILLNDVGSIKQYRTSVLGSSEPYLEVYSNLYYFLAQSEEMSATDKWPGFVLTKEGKEFIQHNANLFKYDLLYNPLQFESWQKLAHIYDEHEIHELLALVYYDSLQNVVPFYDQRSVMPPKDEAWLRVCENSLKHFKKAFAHQQDWSHAFYMGKLSEKLGLSHDKALSYYAEAIALNPSAVDSIYRMHASRLKFLGNCGKGDLQAWKDLSTYAFNQSTRDAVMDISSKFGPKTSDLPTDVDGHEAYSEDIKHDEFLKVEKAWHMLYNDCLSGLETCVEGNLKHYHKARYTLARGLYRRAEKGDVDKAKDELSFCFKSSCSSFTINMRKAPGLSGNRKALEVNLPESSRKFITCIKKYLLFYLKLLEDTGDICTLERAYISLQADKRFALCIEDLVPVALGRYVKVLITFIRQVGIASSGDASGYEHILEKMFALFVEQGNLWPELCSLPEIQGPVLQIAIVLALITPVLSESSTESQTSSSLPGGLESNQLLCVDLQINELSSSTFEDSTHLKSLEPKWCPILSKINNMFVKRAAEVNWETANSLLRSCYNFFRESSCMLPSGLNLYLVPYRLATGANFQQRMDGIEILDFSMPRKLLLWAYTLVHGHFANISSVVKHCEEHLKTPVPPPCMQLQALEEMVQTTVGKQMQKHLHSPSLHLLHCQRIRPRAVQFCFFRVATLAEVHFMAPNFNNVAILLLREYLMEEIQTKDDSPALPRNIKFGDSFHFGSAIHSWIGMGSKALPLLKGASSFPSFKRQIFISTALHSLPVSNITIRKCSTASGILASLQPPDVPRLAETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADAEGGNQRNDVPQTFENREAMIGAVPVFDEPYIKVPKTCLLALGYYKAWLRWVHWLPYRGIYTRAGQMQVGRAGQSWVPME 1663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30364106 30382133 - Lsi04G023170.1 Lsi04g02317 662366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02317 1663 MobiDBLite consensus disorder prediction 332 367 - -
Lsi04g02317 1663 Hamap Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 1529 1622 IPR003837 GO:0006450
Lsi04g02317 1663 PANTHER CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED 4 365 IPR033053 -
Lsi04g02317 1663 PANTHER CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED 367 1369 IPR033053 -
Lsi04g02317 1663 SUPERFAMILY Glu-tRNAGln amidotransferase C subunit 1531 1619 IPR036113 GO:0006450
Lsi04g02317 1663 Coils Coil 16 36 - -
Lsi04g02317 1663 SUPERFAMILY TPR-like 58 930 IPR011990 GO:0005515
Lsi04g02317 1663 Coils Coil 622 642 - -
Lsi04g02317 1663 MobiDBLite consensus disorder prediction 424 445 - -
Lsi04g02317 1663 Pfam Glu-tRNAGln amidotransferase C subunit 1546 1617 IPR003837 GO:0006450
Lsi04g02317 1663 MobiDBLite consensus disorder prediction 268 304 - -
Lsi04g02317 1663 MobiDBLite consensus disorder prediction 280 304 - -
Lsi04g02317 1663 Gene3D - 1532 1572 - -
Lsi04g02317 1663 MobiDBLite consensus disorder prediction 424 443 - -
Lsi04g02317 1663 SUPERFAMILY TPR-like 11 108 IPR011990 GO:0005515
Lsi04g02317 1663 Gene3D Tetratricopeptide repeat domain 6 201 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02317 K17613 CABIN1; calcineurin-binding protein cabin-1 - csv:101222622 1228.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00781 Lsi-Chr4:7342726 Lsi04g02317 Lsi-Chr4:30364106 1.10E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g39 . . . . . . . . . . Cma01g01445 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02317 Csa03g04535 Chy04g00168 . . . . . . . . . Sed05g1516 Cmo01g01499 . . . . . . Cpe02g00503 Bhi09g02556 Tan01g3903 Cmetu04g0903 . Hepe01g2205 Mch11g0755 . . . . . . . . . . . Cme04g00193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009721 1 3 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02317 Lsi_Chr04 FPKM 56.149868 67.088974 14.308342 13.81074 15.675894 14.321303 14.434251 1.533497 0.844205 0.937505