Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02318 ATGGCGATCGCTGCAGAGAACCAGCCCCAGGAGAAGATTACCACTACGGAGGCCTCTGCTGTCGAAAAGAAAAGATGGACGCTTAACGACTTTGACATCGGGAAGCCTCTCGGAAGAGGGAAGTTTGGTCATGTCTATCTGGCTAGAGAAAAGAGGAGTAATCACATTGTGGCTCTGAAGGTTCTATTCAAGAGCCAGTTACAACAGTCGCAGGTTGAGCACCAGCTTCGTCGGGAAGTTGAAATACAGAGTCATCTTAGACACTCCAACATTCTGCGCCTTTATGGATATTTCTACGATCAAAAACGGATTTATTTGGTATTGGAATATGCGCCCAGAGGTGAGCTTTACAAGGAACTACAGAAGTGCAAGTACTTCAGTGAGAGACGTGCTGCTACTTATGTCGCGTCATTGGCTCGGGCACTCATATACTGTCATGGAAAACATGTAATCCACAGAGACATCAAACCAGAAAATCTTCTAATTGGTGCCCAGGGTGAACTCAAGATAGCTGACTTTGGATGGTCAGTGCACACGTTCAACCGTAGGCGGACTATGTGTGGAACACTGGATTATCTGCCTCCTGAAATGGTGGAGAGTGTGGAACACGATGCAAGTGTGGATATCTGGAGCCTTGGTGTACTGTGCTATGAGTTTCTCTATGGGGTACCTCCGTTTGAGGCTAAGGAACACTCTGACACGTACAGGAGAATCGTGCAAGTAGATTTGAAGTTTCCTCCAAGACCAATCATTTCTTCAACTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTGCTCTAAACGGTTGCCACTACACAAAGTTCTTGAACACCCTTGGATTGTCCAAAATGCAGAGCCCTCTGGTGTATATAAGAGTTGA 885 45.99 MAIAAENQPQEKITTTEASAVEKKRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHSNILRLYGYFYDQKRIYLVLEYAPRGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPRPIISSTAKDLISQMLVKDCSKRLPLHKVLEHPWIVQNAEPSGVYKS 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30387878 30390920 + Lsi04G023180.1 Lsi04g02318 662367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02318 294 PIRSF ILK 3 281 - -
Lsi04g02318 294 SUPERFAMILY Protein kinase-like (PK-like) 19 286 IPR011009 -
Lsi04g02318 294 Pfam Protein kinase domain 33 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02318 294 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Lsi04g02318 294 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Lsi04g02318 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Lsi04g02318 294 SMART serkin_6 31 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02318 294 Gene3D Transferase(Phosphotransferase) domain 1 115 292 - -
Lsi04g02318 294 ProSiteProfiles Protein kinase domain profile. 31 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g02318 294 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 293 - -
Lsi04g02318 294 CDD STKc_Aurora 30 283 - -
Lsi04g02318 294 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 293 IPR030616 GO:0004672
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02318 K08850 AURKX; aurora kinase, other [EC:2.7.11.1] - csv:101219866 593.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02318 Lsi-Chr4:30387878 Lsi05g01978 Lsi-Chr5:26884548 9.53E-132 dispersed
Lsi06g01261 Lsi-Chr6:23205234 Lsi04g02318 Lsi-Chr4:30387878 1.49E-10 dispersed
Lsi04g02318 Lsi-Chr4:30387878 Lsi06g00529 Lsi-Chr6:6503321 5.36E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g37 . Blo12g01056 . . . . . . . . Cma01g01444 . Car09g00552 . . . Cpe06g00481 . . . . . . . . . . . . . . . . . Cone20ag0325 Lsi04g02318 Csa03g04537 Chy04g00166 . . . . Bda13g01320 . . . Bma02g00077 . Cmo01g01498 . Cma09g00623 . . . . Cpe02g00504 Bhi09g02557 . . . . Mch11g0757 . . . . . . . . . . . Cme04g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002459 2 3 1 2 1 1 3 2 2 1 1 1 3 2 2 2 2 4 3 2 2 2 2 2 1 1 2 3 1 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83619 PF00069 Pkinase 6.30E-74 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02318 Lsi_Chr04 FPKM 3.989657 3.139228 3.477441 3.187526 4.368432 4.476878 3.926673 5.20042 5.374713 6.390177