Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02319 ATGGACGCATGCAAATCGGAGAAACCCATTTGGCCGCTCTCTGTTTCATCACCGACTGGTTGGTTTAGCGCCCGAAGCAGCTTCTCAACAAAAACCAGTGAGCTTAATCGGTTCAAGGGGATCAAGAAGAAGATGTCGTGGCAACAGTACGTGGATGAGCACTTGATGTGCGACATTGAAGGCAACCGTCTCTCTGCTGCTGCGATCATTGGCCAAGACGGTACTGTTTGGGCTCAGAGCTCCAATTTTCCTCAGTTGAAGCCAGAAGAGTTAACAGCCATTATGAATGATTTTGCGCAACCTGAATCACTTGCCCCAACTGGTTTGTTCCATGGTGGCACTAAGTACATGGTTATTCAAGGTGAACCAGGTGCTGTCATAAGAGGAAAAAAGGGTGGTGGCGGGATTACTATTAAGAAAACTAATCTGGGTTTGATCATTGGTATTTATGATGAGCCTGTAACTCCTGGTCAGTGCAACATGATCGTTGAAAGGCTAGGCGATTACCTGATTGAGCACGGACTGTAG 528 46.97 MDACKSEKPIWPLSVSSPTGWFSARSSFSTKTSELNRFKGIKKKMSWQQYVDEHLMCDIEGNRLSAAAIIGQDGTVWAQSSNFPQLKPEELTAIMNDFAQPESLAPTGLFHGGTKYMVIQGEPGAVIRGKKGGGGITIKKTNLGLIIGIYDEPVTPGQCNMIVERLGDYLIEHGL 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30391453 30393225 + Lsi04G023190.1 Lsi04g02319 662368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02319 175 PRINTS Profilin signature 65 74 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Profilin signature 47 56 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Profilin signature 84 104 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Profilin signature 144 157 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Profilin signature 108 122 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Profilin signature 157 174 IPR005455 GO:0003779
Lsi04g02319 175 PANTHER PROFILIN 45 175 IPR005455 GO:0003779
Lsi04g02319 175 CDD PROF 46 174 IPR005455 GO:0003779
Lsi04g02319 175 Gene3D Dynein light chain 2a, cytoplasmic 43 175 - -
Lsi04g02319 175 SUPERFAMILY Profilin (actin-binding protein) 46 174 IPR036140 -
Lsi04g02319 175 SMART prof_2 45 175 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Plant profilin signature 96 110 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Plant profilin signature 148 161 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Plant profilin signature 45 58 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Plant profilin signature 161 174 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Plant profilin signature 71 84 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Plant profilin signature 115 124 IPR005455 GO:0003779
Lsi04g02319 175 PRINTS Plant profilin signature 128 143 IPR005455 GO:0003779
Lsi04g02319 175 PANTHER PROFILIN-2 45 175 - -
Lsi04g02319 175 Pfam Profilin 45 174 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02319 Lsi-Chr4:30391453 Lsi11g00217 Lsi-Chr11:2219045 2.19E-72 dispersed
Lsi04g02319 Lsi-Chr4:30391453 Lsi02g02980 Lsi-Chr2:35886922 3.60E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02319 K05759 - tcc:18588488 223.016