Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02321 ATGGGTCGCTCCCTTCTCTCTCACTTTCTCGTCCTCTCACAGTCGTCTCCTCGCTTTACACCTTCTCTATCATTTTCTACGTTTGGAAGCAAATACACCAAGCCTCATTCGCTCTTTCCGCTTCATCGGTCTGCAATCGGAAATAGTTCCCGATGTTGTTGCGGTATCTCCCTCACTGAACCTGCTGCGCCAGAGCGTCCTCCCAGTTCCATTAAACAGCGGATAGTATCTGGCGTTCAGCCAACCGGCTCTATTCACCTTGGTAATTATCTGGGTGCAATAAAGAATTGGATTTCACTTCAGGACACATATGATACTCTCTTCTTCATTGTGGATCTCCACGCGATCACATTACCTTATGATACTCAGCAATTACATAAAGCAACAAGAGATACAGCGGCCATTTATTTAGCATGTGGTGTAGATACCTCCAAGGCTTCTGTCTTTGTTCAGTCTCATGTTCGTGCTCATGTAGAGCTGATGTGGCTACTTAGTTCAGCTACGCCAATTGGTTGGCTGAACAGGATGATCCAGTTTAAGGAGAAATCACGCAAGGCGGGGGATGAAAATGTTGGCGTTGCACTTCTCACTTATCCTGTCCTTATGGCTTCTGATATTCTTCTATATCAGTCAGACTATGTCCCTGTTGGTGAGGATCAAAAGCAGCATCTTGAGTTGACTCGTGAGCTGGCTGAGCGTGTTAATTATCTATATGGTGGAAGGAAGTGGAAGAAATTAGGAGGGAGAGGTGGGGTTATTTTCAAGGTACCTGAGCCACTCATACCTCCAGCTGGTGCACGAGTTATGTCCCTCACCGATGGTCTCTCGAAGATGTCGAAATCTGCTCCTTCTGATCAATCCAGAATCAATCTTCTTGACCCAAAAGATGTAATAGTCAGCAAGATAAAACGTTGCAAAACTGACTCATTTCCAGGGTTGGAATTTGACAATCCTGAAAGACCTGAATGCAACAATCTTCTTGCAATTTACCAACTTGTTTCTGGAAAAGCAAAAGAGGATGTTAAGCAGGAGTGCGAAAATATGAATTGGGGAACATTTAAAATCCTTCTCACTGATGCTTTGGTCGATCATCTCCATCCTATCCAGGTCCGCTACAAGGAAATTATATCTGATTCAGTGTATTTGGATGAAGTCCTGGCCGAAGGTGCTAGGAAAGCTTCAAGTATTGCAGATGTTACTGTCAATAATGTCTATCAAGCTATGGGTTTCTTAAAGAGATGA 1242 43.96 MGRSLLSHFLVLSQSSPRFTPSLSFSTFGSKYTKPHSLFPLHRSAIGNSSRCCCGISLTEPAAPERPPSSIKQRIVSGVQPTGSIHLGNYLGAIKNWISLQDTYDTLFFIVDLHAITLPYDTQQLHKATRDTAAIYLACGVDTSKASVFVQSHVRAHVELMWLLSSATPIGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDYVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGVIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIVSKIKRCKTDSFPGLEFDNPERPECNNLLAIYQLVSGKAKEDVKQECENMNWGTFKILLTDALVDHLHPIQVRYKEIISDSVYLDEVLAEGARKASSIADVTVNNVYQAMGFLKR 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30410980 30420520 - Lsi04G023210.1 Lsi04g02321 662370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02321 413 CDD TrpRS_core 74 362 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lsi04g02321 413 Hamap Tryptophan--tRNA ligase [trpS]. 72 411 IPR024109 GO:0004830
Lsi04g02321 413 PANTHER BNAA04G15180D PROTEIN 66 410 - -
Lsi04g02321 413 Pfam tRNA synthetases class I (W and Y) 74 365 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi04g02321 413 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 81 90 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lsi04g02321 413 TIGRFAM trpS: tryptophan--tRNA ligase 72 410 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lsi04g02321 413 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 66 410 - -
Lsi04g02321 413 Gene3D - 270 380 - -
Lsi04g02321 413 Gene3D HUPs 75 409 IPR014729 -
Lsi04g02321 413 PRINTS Tryptophanyl-tRNA synthetase signature 135 154 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lsi04g02321 413 PRINTS Tryptophanyl-tRNA synthetase signature 277 287 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lsi04g02321 413 PRINTS Tryptophanyl-tRNA synthetase signature 212 233 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lsi04g02321 413 PRINTS Tryptophanyl-tRNA synthetase signature 85 101 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Lsi04g02321 413 SUPERFAMILY Nucleotidylyl transferase 74 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02321 K01867 WARS, trpS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] - csv:101219148 775.393
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g9 . . . . . . . . . . Cma01g01442 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02321 Csa03g04541 Chy04g00162 . . . Bda01g00942 . . . . . . Cmo01g01496 . . . . . . Cpe02g00506 Bhi09g02566 Tan01g3920 . . . . . . . . . . . . . . . Cme04g00186
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004388 1 5 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 8 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02321 Lsi_Chr04 FPKM 29.221445 29.322609 41.911591 38.999062 32.674511 32.184689 35.73008 45.226757 45.821621 48.383034