Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02325 ATGATGGCTGTGACCTCCGCCTGCAAGGACGCTGCTAGCAAGATGAGCAGCTTGGATAATGGCAAGTACGTTAGGTACACTCCGGAGCAAGTGGAAGCCCTCGAGAGGCTTTATTATGAATGCCCAAAACCCAGTTCTGTGCGCCGCCAGCAGCTCATCAGGGAGTGCCCAATTCTCTCCAACATCGAACCCAAGCAGATCAAAGTTTGGTTCCAAAATCGGAGATGTAGAGAGAAGCAGAGAAAGGAGGCATCACGCCTTCAGACTGTGAACAGGAAGCTTACGGCTATGAATAGACTCCTAATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCCCAGCTTGTGTATGAGAACAGCTATTTTCGTCAACAGACCCAGAATGCGACCTTAGCCACCACTGACACAAGTTGCGAGTCAGTGGTGACAAGTGGTCAACAGAATTTGACTCCGCCGCATCCACCAAAGGATGCCAGTCCCGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGATGCACTGGAGTTGCTGCTCGTGCATGTGGACTTGTGGGTCTCGAACCTACAAGAGTGGCTGAAATTCTTAAAGATTGGCCTTCTTGGTTTCGCGATTGCCGTGCCGTTGATGTTCTAAACGTCCTATCTACTGGAAATGGAGGAACCATTGAGCTTCTATACATGCAGGTGGGCTACTACTTGATACTCTATGCACCTACTACTTTGGCACCTGCTCGTGATTTCTGGCTGCTGCGATACACATCTGTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCTCTTAACAATACTCAGAATGGTCCAAGTATGCCTCCTGTCCAGAACTTTGTAAGAGCAGGAATGCTACCAAGTGGCTATTTGATAAGACCTTGTGAAGGTGGTGGATCAATAATCCATATAGTTGATCACATGGACTTAGAACCTTGGAGCGTGCCTGAAGTGTTGCGGCCATTATACAAGTCATCTACTCTGCTTGCTCAGAAGAACACAATGGCAGCATTACGCTTGTTGAGACAGATATCACAAGAAGTTTCTCAGCCAAATGTTACTGTTAATGGGTTTACAGACGAGGGATGGTCTTTGTTAGAAAATGATGGCATTGATGATGTTACACTTCTCGTAAACATGTCTCATGGCAAGACAATGATGGGTGCAAATATTTCATATTCAAATGGCTTTCCATCCATGAGCAACGCAGTGCTTTGTGCCAAAGCATCAATGTTATTACAGAATGTTACTCCAGCAATGCTCATCAGATTCTTGAGAGAACACCGGTCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCCGCAGCAATTAAGACCGGTCAGTGTGGTTTACCAGGGTCTCATGCTGGAACTTTTGGGGGTCAGTTTATGGAAGTTGTTAAATTTGAAAACGTGGGCCACTATAGGGATGATATGCTCATGCCGGGTGACATCTTCCTCCTCCAACTTTGCAACGGTGTGGATGAGAATGCTGTTGGTACTTCTGCCGAACTCATCTTCGCTCCAATTGACGCCTCTTTTTCTGATGATGCACCTATTCTACCATCTGGCTTCCGCATCATTCCTCTCGACTCTGGGATGGATGCTTCAAGTCCAAACCGCACACTTGATCTTGCTTCGGCTCTCGATGTTGGACCTGCAGGGAATAGAGCTTCTGGTGATTGTGCTGGTCAATCAGGAAAATCAAAATCCGTGATGACAATTGCATTCCAATTTGTATTTGATGTTCACCTTCAAGATAATGTAGCAGCAATGGCACGGCAGTATGTCAGGAGCATTATAGCTTCTGTTCAGAGGGTGGCACTGGCTCTTTCCCCTTCGAATTTTGGTCCTCATGCTAACCTTCAGACACCAGCTGGTGCTCCTGAAGCACAAACACTTGCTCGTTGGATCTCTCAAAGCTATAGGTATTCCAAAAATCTCTTGGCTGTGAATATTTTCAATCAATGTTTAATTCAAAATTACATTCTAGATGAAACAGAAGTTTTGAAGGAAGCCCTATCTAAATCCACAATAGTAGGGTGGATTAGATTTATCTTTAGCTCCTCGAAGAAGTTTAAAAGAGCTACGTTCAAACATAATCCTAAGAATCTGATCATGGCTTGTCTAAAAGTCTTGTTCCCTTTTGTTTTCTTTCTTAATTTTGAATTGATTTTGATTCACTTACAAGTGTCTTCTCATCTAATAGTCTTAACTGACTTAGAGTGCTATATGGGCATGGAATTACTGAAAAATGAAGGAAGAGAATCCGTTCTCAAATCCCTTTGGCATCACTCTGATGCAGTCATGTGCTGCTCTTTGAAGGCATTGCCAAATTTTACGTTTGCAAATCAGTCTGGACTTGACATGCTTGAGACAACCTTGGTTGCTCTCCAAGACATTACTCTGGAGAAGATCTTTGATGACAATGGCAAGAAAACTTTAGCCTCAGAGTTCCCGCGGATAATGCAGCAGGGCTTCCTTTGTCTTCAAGGGGGTGTCTGCTTATCAAGCATGGGAAGGGCAGTATCCTACGAGAAAGCTGTGGCATGGAAGGTTTTGAATGAAGAAGAAAACGCTCACTGTATTTGCTTCATGTTTATGAACTGGTCTTTTGTTTGA 2736 44.59 MMAVTSACKDAASKMSSLDNGKYVRYTPEQVEALERLYYECPKPSSVRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNRLLMEENDRLQKQVSQLVYENSYFRQQTQNATLATTDTSCESVVTSGQQNLTPPHPPKDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDWPSWFRDCRAVDVLNVLSTGNGGTIELLYMQVGYYLILYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAGMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYKSSTLLAQKNTMAALRLLRQISQEVSQPNVTVNGFTDEGWSLLENDGIDDVTLLVNMSHGKTMMGANISYSNGFPSMSNAVLCAKASMLLQNVTPAMLIRFLREHRSEWADSSIDAYSAAAIKTGQCGLPGSHAGTFGGQFMEVVKFENVGHYRDDMLMPGDIFLLQLCNGVDENAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLDSGMDASSPNRTLDLASALDVGPAGNRASGDCAGQSGKSKSVMTIAFQFVFDVHLQDNVAAMARQYVRSIIASVQRVALALSPSNFGPHANLQTPAGAPEAQTLARWISQSYRYSKNLLAVNIFNQCLIQNYILDETEVLKEALSKSTIVGWIRFIFSSSKKFKRATFKHNPKNLIMACLKVLFPFVFFLNFELILIHLQVSSHLIVLTDLECYMGMELLKNEGRESVLKSLWHHSDAVMCCSLKALPNFTFANQSGLDMLETTLVALQDITLEKIFDDNGKKTLASEFPRIMQQGFLCLQGGVCLSSMGRAVSYEKAVAWKVLNEEENAHCICFMFMNWSFV 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30462708 30470710 - Lsi04G023250.1 Lsi04g02325 662374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02325 911 CDD homeodomain 22 82 IPR001356 GO:0003677
Lsi04g02325 911 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Lsi04g02325 911 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Lsi04g02325 911 Pfam MEKHLA domain 779 910 IPR013978 -
Lsi04g02325 911 SMART HOX_1 19 85 IPR001356 GO:0003677
Lsi04g02325 911 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 682 IPR044830 GO:0003700
Lsi04g02325 911 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 778 911 IPR044830 GO:0003700
Lsi04g02325 911 SMART START_1 165 381 IPR002913 GO:0008289
Lsi04g02325 911 Coils Coil 91 118 - -
Lsi04g02325 911 CDD bZIP 74 113 - -
Lsi04g02325 911 Pfam START domain 166 380 IPR002913 GO:0008289
Lsi04g02325 911 PANTHER CLASS III HD-ZIP PROTEIN CNA1 6 682 - -
Lsi04g02325 911 PANTHER CLASS III HD-ZIP PROTEIN CNA1 778 911 - -
Lsi04g02325 911 CDD START_ArGLABRA2_like 160 381 - -
Lsi04g02325 911 SUPERFAMILY Bet v1-like 165 381 - -
Lsi04g02325 911 Gene3D - 14 88 - -
Lsi04g02325 911 ProSiteProfiles START domain profile. 156 376 IPR002913 GO:0008289
Lsi04g02325 911 Gene3D - 200 383 IPR023393 -
Lsi04g02325 911 SUPERFAMILY Homeodomain-like 21 84 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02997 Lsi-Chr2:36053588 Lsi04g02325 Lsi-Chr4:30462708 0 dispersed
Lsi03g00047 Lsi-Chr3:752550 Lsi04g02325 Lsi-Chr4:30462708 6.58E-13 dispersed
Lsi03g00048 Lsi-Chr3:754696 Lsi04g02325 Lsi-Chr4:30462708 1.14E-25 dispersed
Lsi04g02325 Lsi-Chr4:30462708 Lsi10g01265 Lsi-Chr10:16918673 4.98E-45 dispersed
Lsi04g02325 Lsi-Chr4:30462708 Lsi01g00085 Lsi-Chr1:832790 4.61E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25262 PF01852 START 3.80E-50 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02325 K09338 - csv:101218438 1301.58