Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02328 ATGGAAGGACCCGAATATTTCCAGCCCGGTTTTTGCTCTCAATTCGCCACCGAAAACCGCCAGTCCACCGATGCAAATAAAACCACCGTCGTCCAACCCTCCGCTGTTGCCGCCACTGCTGACCATTTCGTCGAGGACCTCTTAGATTTCTCTAATGACGACGACGTTGTCTTCACCGATGGAAATTTCGACAACCAAACCCCTACCTCCACCGATTCCTCCACTCTTACTTTACTCGATTCATGCAATTCCTACCCCAATTTCGAACAACACAACAATGCCCACAACTATAATTTCGCCGACGCCAATTTCTCCACCGACCTTGGTGTGCCGTACGATGACTTGGCGGAGCTGGAATGGCTTTCCAATTTCGTGGAAGACTCTTTCTCCACCGACGACTTGGAGAAGCTGAGTCTGATATCCGGGATGAATTCCCGGACTGACCATGACGATGACGCCTCAAAAACCCCAGAATTCCAGACCGGATTGAACCGGAACCACTCGTCATCCGGTTTCCGTCCCGAAATGTCGGTACCAGCTAAAGCCGCTCGTAGCAAGCGGTCTCGGGCGGCGCCCTGCATATGGAACTCCCGATTATCCGTACTCTCTCCCACAAATTCCTCTTCCGAAACCGACGTTGTCGTCACGCTCACGCCACATCCAAACACCGCCAAGAAAACCGCCAAGAAGAAAGAAATCCCGGACGACACGTCGTCCGCCGGCAATGGGGAAGGCCGTAAATGCCTCCATTGCGCCACCGACAAAACGCCGCAGTGGCGAACGGGCCCAATGGGCCCAAAGACTTTATGTAACGCTTGTGGGGTCCGGTACAAGTCCGGTCGTCTCGTACCGGAATACCGACCGGCGGCGAGCCCCACGTTTGTACTGACGAAACACTCGAATTCTCACCGGAAAGTTATGGAACTCCGACGGCAGAAGGAGATGATGAGAGCACAGCATCAACAACAGTATGTTCATCATGAGAGCATGGGGTTTGATCATGTATCCAACGACGACGATTATTTGATCCATCAACACATAGGGCCGCTCTACCAATAG 1059 52.79 MEGPEYFQPGFCSQFATENRQSTDANKTTVVQPSAVAATADHFVEDLLDFSNDDDVVFTDGNFDNQTPTSTDSSTLTLLDSCNSYPNFEQHNNAHNYNFADANFSTDLGVPYDDLAELEWLSNFVEDSFSTDDLEKLSLISGMNSRTDHDDDASKTPEFQTGLNRNHSSSGFRPEMSVPAKAARSKRSRAAPCIWNSRLSVLSPTNSSSETDVVVTLTPHPNTAKKTAKKKEIPDDTSSAGNGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMMRAQHQQQYVHHESMGFDHVSNDDDYLIHQHIGPLYQ 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30490393 30492140 + Lsi04G023280.1 Lsi04g02328 662377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02328 352 Pfam GATA zinc finger 248 281 IPR000679 GO:0006355|GO:0043565
Lsi04g02328 352 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Lsi04g02328 352 MobiDBLite consensus disorder prediction 222 243 - -
Lsi04g02328 352 SMART GATA_3 242 292 IPR000679 GO:0006355|GO:0043565
Lsi04g02328 352 MobiDBLite consensus disorder prediction 145 175 - -
Lsi04g02328 352 PIRSF Txn_fac_GATA_plant 21 338 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lsi04g02328 352 Gene3D - 243 327 IPR013088 GO:0006355|GO:0008270
Lsi04g02328 352 CDD ZnF_GATA 247 294 IPR000679 GO:0006355|GO:0043565
Lsi04g02328 352 PANTHER GATA TRANSCRIPTION FACTOR 1 351 - -
Lsi04g02328 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 243 306 - -
Lsi04g02328 352 MobiDBLite consensus disorder prediction 157 173 - -
Lsi04g02328 352 ProSitePatterns GATA-type zinc finger domain. 248 273 IPR000679 GO:0006355|GO:0043565
Lsi04g02328 352 ProSiteProfiles GATA-type zinc finger domain profile. 242 278 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g02328 Lsi08g01074 CCT
Lsi04g02328 Lsi08g01074 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00072 Lsi-Chr4:892197 Lsi04g02328 Lsi-Chr4:30490393 2.66E-39 dispersed
Lsi04g02328 Lsi-Chr4:30490393 Lsi07g00224 Lsi-Chr7:2415732 3.58E-49 dispersed
Lsi02g02999 Lsi-Chr2:36081820 Lsi04g02328 Lsi-Chr4:30490393 1.05E-90 transposed
Lsi07g00519 Lsi-Chr7:5457234 Lsi04g02328 Lsi-Chr4:30490393 7.22E-92 transposed
Lsi04g02328 Lsi-Chr4:30490393 Lsi08g01074 Lsi-Chr8:19327525 2.29E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25263 PF00320 GATA 3.20E-15 CL0167 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02328 - - csv:101221905 612.068