Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02330 ATTGGACCCTCAATTCACCACTTTCCCCGTCTCAGTAGCTGGTGTGCCGTGCCGATTGAATTGAAACTCCCATTTCTGACAGTCGAACTTCACAAGTTCAGGCAAAAACACCCACAAGATAAGATTGGCATTGAAACAGAACATCCGCGCTTTACCCACCCTAATTCTTTGGCTCTCTCTGTTTTTCTAAGAATGTTGGGTTCTTCTAATTCTTCCAGAAAGAAGAAGCAAGTGAAGCCAGAAAAAGAATGGCTGTCGGTGAGTTTCAGACCCGAGAACTTCATTCCAGGCCTCGTAATTGGTTTCATTCTTGGATTGTTTTTGGATTTGTCAAAACCCAGTAAAGGCAATGCTAAGAAAGGCTATTTCCTGCCGTCCAAGTACCAACAGCTATCTCCTGCTTCAAACAACGGTGATCAAGAGCTCAAATTGGTCCTTGTTGTTAGGCAAGATCTGAAGATGGGTTCTGGAAAAATTGCATCTCAATGTGCTCATGCTGCTACTGGCTTGTATGCAGAACTCATGCAAAGCCACCGAAACCTTTTGAGACAGTGGGAGCTATGTGGGCAGCCGAAAATAGTTGTTACATGCAAGAATCAACAAGAAATGAATAAACTGAAGGATGCAGCTGAAAACATTGGCCTTCCTACTTTTGTTGTTGCTGATGCTGGACGCACACAGGCATCAGAAAGTGAATGTTATGAGATCTCCGAAGTGAAAAGAATAGCTGTTTGTGGTTCAGCATTGTATAGAGTGGCTGCAAAACCCTTGGTTTCGGCTGGATCGAAGACTGTTCTTGCCATTGGACCTGGGCCAAAGGAGGCCATTGATGCAGTGACTGGGAAACTCCGTCTACTCTAG 861 44.6 IGPSIHHFPRLSSWCAVPIELKLPFLTVELHKFRQKHPQDKIGIETEHPRFTHPNSLALSVFLRMLGSSNSSRKKKQVKPEKEWLSVSFRPENFIPGLVIGFILGLFLDLSKPSKGNAKKGYFLPSKYQQLSPASNNGDQELKLVLVVRQDLKMGSGKIASQCAHAATGLYAELMQSHRNLLRQWELCGQPKIVVTCKNQQEMNKLKDAAENIGLPTFVVADAGRTQASESECYEISEVKRIAVCGSALYRVAAKPLVSAGSKTVLAIGPGPKEAIDAVTGKLRLL 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30498847 30503509 - Lsi04G023300.1 Lsi04g02330 662379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02330 286 Gene3D Bit1 137 286 IPR023476 -
Lsi04g02330 286 PANTHER PEPTIDYL-TRNA HYDROLASE 2, MITOCHONDRIAL 258 286 - -
Lsi04g02330 286 PANTHER PEPTIDYL-TRNA HYDROLASE 2, MITOCHONDRIAL 69 229 - -
Lsi04g02330 286 TIGRFAM arch_pth2: peptidyl-tRNA hydrolase 142 229 IPR002833 GO:0004045
Lsi04g02330 286 Pfam Peptidyl-tRNA hydrolase PTH2 142 286 IPR002833 GO:0004045
Lsi04g02330 286 SUPERFAMILY Peptidyl-tRNA hydrolase II 141 286 IPR023476 -
Lsi04g02330 286 CDD PTH2 143 286 IPR002833 GO:0004045
Lsi04g02330 286 PANTHER PEPTIDYL-TRNA HYDROLASE 2 258 286 IPR002833 GO:0004045
Lsi04g02330 286 PANTHER PEPTIDYL-TRNA HYDROLASE 2 69 229 IPR002833 GO:0004045
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02330 K04794 PTH2, PTRH2; peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] - csv:101217564 340.887
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02330 Lsi-Chr4:30498847 Lsi10g00254 Lsi-Chr10:4134087 2.24E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g281 . Blo12g00753 . Bda03g00431 . . Bma04g00409 . . . Cma01g01438 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02330 Csa03g04549 Chy04g00153 . . . . . . Bpe04g00399 . . . Cmo01g01488 . . . . . . Cpe02g00510 Bhi09g02577 . . . . . . . . . . . . . . . . Cme04g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011134 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02330 Lsi_Chr04 FPKM 15.951071 15.301371 24.433372 23.770136 14.189634 12.452991 16.12748 25.421074 25.909193 24.44751