Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02331 ATGTCATCAACAGAAGAATCTCAAATTTCTGAACCATCATCAAGAGATGGTACTTTCAATTCTCCCAATAACAACCAATCCAAACCCAACAAGCGCGTTCGTGCTGATTCCACCAAGCACCCAATGTATCGTGGCGTAAGAATGCGGGCTTGGGGCAAATGGGTCTCTGAAATCCGTGAGCCACGCAAGAAATCCCGCATTTGGCTCGGAACTTTCCCCAACCCTGAAATGGCTGCTCGAGCCCACGACGTTGCTGCCTTGGCCATCAAAGGTAATTCCGCCATTCTCAACTTCCCTCAACTCGCTCACTCCCTTCCCCGCCCTGTTTCCTTCGCCCCTCGTGACGTTCAAGCCGCCGCCGCCAAGGCCGCCCACATGGACCCTAATTTCCTCCACTATTCTCCTTCCCCTGTTTCCACTTCCCCCTCCCCCTCCCCCTCCTCCGCCGCCGACGACTCCGACGAACTCACCGAGATCGTCAAACTCCCTAGTCTCGGCTCCAACTACGATCACTTCATCTCCAATAACGAGTTCGTGTTGATGGACTCGACGGAGGGATGGGTTTATCCGCCGCCCTGGTTACGAACCATGGAGGATTCCGGCTACAGTAGCAATAACATTATCGACGATTTGGGAACTATGGTTGGGGATAGTAATTTCTTGTGGGATTATTAA 675 52.59 MSSTEESQISEPSSRDGTFNSPNNNQSKPNKRVRADSTKHPMYRGVRMRAWGKWVSEIREPRKKSRIWLGTFPNPEMAARAHDVAALAIKGNSAILNFPQLAHSLPRPVSFAPRDVQAAAAKAAHMDPNFLHYSPSPVSTSPSPSPSSAADDSDELTEIVKLPSLGSNYDHFISNNEFVLMDSTEGWVYPPPWLRTMEDSGYSSNNIIDDLGTMVGDSNFLWDY 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30517216 30517890 - Lsi04G023310.1 Lsi04g02331 662380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02331 224 MobiDBLite consensus disorder prediction 133 152 - -
Lsi04g02331 224 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Lsi04g02331 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 208 - -
Lsi04g02331 224 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Lsi04g02331 224 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Lsi04g02331 224 CDD AP2 43 99 IPR001471 GO:0003700|GO:0006355
Lsi04g02331 224 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Lsi04g02331 224 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Lsi04g02331 224 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Lsi04g02331 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 208 - -
Lsi04g02331 224 MobiDBLite consensus disorder prediction 1 41 - -
Lsi04g02331 224 MobiDBLite consensus disorder prediction 1 31 - -
Lsi04g02331 224 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Lsi04g02331 224 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02331 Lsi-Chr4:30517216 Lsi06g00816 Lsi-Chr6:17232586 7.02E-61 dispersed
Lsi05g02189 Lsi-Chr5:28515186 Lsi04g02331 Lsi-Chr4:30517216 6.01E-42 transposed
Lsi04g02331 Lsi-Chr4:30517216 Lsi08g01086 Lsi-Chr8:19470778 1.01E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25264 PF00847 AP2 5.00E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02331 K09286 - csv:101217333 274.248