Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g02333 ATGGCTTCTATTAGAAGGACCTTGTCTCCAGTTCCTCGACCTGGAACTTCAATGAATGGAGAAGCGTGTTCAGTAGGTTCTCCCCTGTCGAGGTCTTCACTATCTCCTCAAAACTACCCTCAATCTACTGGACTGCACTATTCCCTGTTTAATACATTGGAGGCCCAAGCTGCCATCCTTGGTATCTACTCTCCAAGGTCTTCTAGACCAATAGACAAATCAAAACCAAAGGTACAGGTTTGGAGGAGGGCGATGTTTCAATTTTTCATGTGTTTTTTTGTTGGGTTTCTTGCTGGATTGGTACCATTTGCATCTACCAACTTATCCATGAATGTCATGTCAAAATATCAAGCTTTCCAGTTTGATAGGATCTCCACTGATGGAAAATCTCAGCCTCAGAATAGTTCTAGCAGCACCACCTCTATTCCATTGGAAAGTGAAGTCATGAAGAGTAACCCAATCCTATCTGAGGTGCTAAGGTATAATAATGTTTCTTATGATCATTTGGATAATCATCTAATTGTTCAAGAATTAGAACCTCGAAAGCTACTGATAATTGTGACCCCGACGTCTGCTCATCCACTACAATACTATTATCTTAATCATTTGGCACAAACACTAAAGTTGGTCCGACCGCCTCTTCTATGGATAGTTGTGGAAATGTCTTCCCAATCTGATGAAACAGCTGATGTATTGAGGAGTACTGGGATTATGTTTAGGCATATTGTTTGCAGTAAAAACTTAACTGATATGAGAGATGGAAGAGTTCATCAAAGAAATCTAGCCCTGTCTCACATTGAAACCCACCGCCTTGATGGAATCGTTTACTTTGCAGATGAGAATAATTTCTATTTGGTTGATCTATTTGAGAAAATGAGGGAGATCAGACGATTCGGAATTTGGCCGGTGGCAAAACTAATAGGTGGTACAAGTAGATCCATTCTGGAAGGCCCCGTTTGTAATGGAAGTCTTGTAATCGGATGGCACATATATGAATCAAGTATGAGACTTCGCAGGTTTCATGCTGAACTATCAGGTTTTGCTTTCAATAGCACCATACTATGGGATCCAGAAAGGTGGCATCGACGCACTTTAGAACCTGTGAGGCAGCTTGATACCATTAAAGATGGCCTCCAAGCAAGCGACTTCATCGAACAAATTGTGGAAGATGAAAGCCAAATGGAAGGTTTACTAGAAGACTGCTCGAGAATCATGGTCTGGAACGTTAATCTTAAACCGTCAAGTGCAGTTTATCCTCACAAATGGTTCACGACGAACAATCTAGATGTCACTGCTTCGCTTACGACATTTGATGATTTGATATTTTGTACAGAAGGCCCCAGCTACCTTTTCCTCTCATTGATAGGGATAGATGCTGAGACTAAATGGGAGGTTCTTAACACTCTGAAGTACTGGGACCAAACTAGATTCCTTCTCTTGCTCTCTTTTGTGGCAAACAAGAATAGGCAAGGATTTGCCTTGCTCAGCAATCCTATGAAATTCTCCACTAAAAACCCAGTTCCCTCTTCCTTAGTTCAAATTCCAAAGCATAGCATAGAGTGCAGAAACCAAACCGATCCGATGGTCCCAAATTTAGATCTGATAGCTCTTGCTTGTCTCTACGGTTCCTTCATTGCTCTCGTTCTCCTCATCATCATCTTCTTTCTCTTGGTTATACTGTTTCTATCATCCTCCCTTGCTCTGTTTTCAGTATTTGTGGGGGACTTGTATGAAGCTTACTCAGTTATGAGTGTGTACTATGAAGAAGTGAAAGCTGAAATTGAATTGGGTGTGTGTTTAATGGTGTATGGGGTGATGGGGTTTGGTGTTGATGTTGTTTTGGTGAGCTCATGTTTAGCTAAATGTTCGTCAACTCGGCTAGAGAACATAGATGAAAATGGCCCTGCAAATTGGTTACCAGGTTCAAGTGTTCTACCTGAAACTCCAATCGAGTCCATGGAGTATCTTGGAAGATCTTGGAGCCTTTCTGCCAAAGAGCTCTCCAAGGCTCTTTCCACTGCCCATGAGGCACCAAGTCATCTTCAAAGTTCTGTGGTTGGCTTTCTTAGTGCTGAAGCACATGATTCAAATTCCACGGTCTTGAGGGAACCACTACTTCGGCACTTACCCAGTGGAGATAGTCCTCCAGCTTCTCCAAGAGGAAGTGACGAAATGAAGGAACTATTGTTACTTCACCAAGCATTGAACCCAGAGTTCTTTTCCAACCAGCAACTGCTTGGAAATGGGCTATACAAGAGCTTATTAAGAGGCAATAAAACATTGGGGAGATGGATGAAGGATCAAAAGGAGAGAAAGAAGCAGGAAATCAGAACACAGAATGCTCAATTACATGCAGCTGTATCTGTTGCTGGTGTTGCTGCTTCAGTAGCAGCATTTATTGCATCACTCGTGTCACGAGAAACATCATCGGGTAATCAGAAATGGCCTTTAAAGACATCAGCAGCCATAGCTTCTGCAGCTGCTCTAGTTGCATCTCATTGCATAGAAATGGCAGAGGAAATGGGAGCTAGCCATGAACATATCTTGAATGTAGTTAACTCTGCGATCAATGCTAGAACTAATGGAGATATCATGACCCTTACAGCAGGAGCAGCTACAGCTTTAAGAGGAGCTGCGACCCTCAGGACAAGGCTTGAGAAAGGGTTGGGAGCCACAAACTTTGGGGTGAGTGAGGATAAGGTTGAAGAAGAAGGGAAAGAATCAAACATCTTGGTAGCAATCAACTATGTTTCCAGGGGAGGAGAGCTTCTCAAACGCACAAGGAAAGGTGTAGTCTCGGGCGTGAACTGCGACGTTGCGGCGTGGCCTGGGCGGGAAAGGGAAACGGATGGCGAGCAGCAGAGGGCTTACTTTGGAATTGTAACAACAGATAGAACAATAGAGTTTGAATGCAATGGGAAAGGAGAAAAACAGATGTGGATTGAGGGTATACAATATATGATGAACTTTCGTGCTTACATGAAATGA 2988 42.84 MASIRRTLSPVPRPGTSMNGEACSVGSPLSRSSLSPQNYPQSTGLHYSLFNTLEAQAAILGIYSPRSSRPIDKSKPKVQVWRRAMFQFFMCFFVGFLAGLVPFASTNLSMNVMSKYQAFQFDRISTDGKSQPQNSSSSTTSIPLESEVMKSNPILSEVLRYNNVSYDHLDNHLIVQELEPRKLLIIVTPTSAHPLQYYYLNHLAQTLKLVRPPLLWIVVEMSSQSDETADVLRSTGIMFRHIVCSKNLTDMRDGRVHQRNLALSHIETHRLDGIVYFADENNFYLVDLFEKMREIRRFGIWPVAKLIGGTSRSILEGPVCNGSLVIGWHIYESSMRLRRFHAELSGFAFNSTILWDPERWHRRTLEPVRQLDTIKDGLQASDFIEQIVEDESQMEGLLEDCSRIMVWNVNLKPSSAVYPHKWFTTNNLDVTASLTTFDDLIFCTEGPSYLFLSLIGIDAETKWEVLNTLKYWDQTRFLLLLSFVANKNRQGFALLSNPMKFSTKNPVPSSLVQIPKHSIECRNQTDPMVPNLDLIALACLYGSFIALVLLIIIFFLLVILFLSSSLALFSVFVGDLYEAYSVMSVYYEEVKAEIELGVCLMVYGVMGFGVDVVLVSSCLAKCSSTRLENIDENGPANWLPGSSVLPETPIESMEYLGRSWSLSAKELSKALSTAHEAPSHLQSSVVGFLSAEAHDSNSTVLREPLLRHLPSGDSPPASPRGSDEMKELLLLHQALNPEFFSNQQLLGNGLYKSLLRGNKTLGRWMKDQKERKKQEIRTQNAQLHAAVSVAGVAASVAAFIASLVSRETSSGNQKWPLKTSAAIASAAALVASHCIEMAEEMGASHEHILNVVNSAINARTNGDIMTLTAGAATALRGAATLRTRLEKGLGATNFGVSEDKVEEEGKESNILVAINYVSRGGELLKRTRKGVVSGVNCDVAAWPGRERETDGEQQRAYFGIVTTDRTIEFECNGKGEKQMWIEGIQYMMNFRAYMK 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30543474 30553447 - Lsi04G023330.1 Lsi04g02333 662382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g02333 995 Pfam Glycosyltransferase family 43 203 411 IPR005027 GO:0015018|GO:0016020
Lsi04g02333 995 CDD GlcAT-I 182 413 IPR005027 GO:0015018|GO:0016020
Lsi04g02333 995 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 1 432 - -
Lsi04g02333 995 MobiDBLite consensus disorder prediction 10 37 - -
Lsi04g02333 995 Pfam Auxin canalisation 646 890 IPR008546 -
Lsi04g02333 995 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 182 428 IPR029044 -
Lsi04g02333 995 MobiDBLite consensus disorder prediction 1 37 - -
Lsi04g02333 995 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 432 IPR005027 GO:0015018|GO:0016020
Lsi04g02333 995 Coils Coil 766 786 - -
Lsi04g02333 995 Pfam Plant pleckstrin homology-like region 921 989 IPR013666 -
Lsi04g02333 995 SUPERFAMILY Nucleotide-diphospho-sugar transferases 183 427 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g02333 K20869 IRX9; putative beta-1,4-xylosyltransferase IRX9 [EC:2.4.2.-] - csv:101217095 770.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02306 Lsi-Chr4:30233981 Lsi04g02333 Lsi-Chr4:30543474 8.29E-117 dispersed
Lsi04g02333 Lsi-Chr4:30543474 Lsi05g00950 Lsi-Chr5:16631898 2.74E-24 dispersed
Lsi04g02333 Lsi-Chr4:30543474 Lsi05g01634 Lsi-Chr5:23994067 4.86E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g305 . Blo12g00757 . . . . Bma04g00405 . . . Cma01g01434 . Car09g00562 . . . . . . . . . . . . . . . . . . . . . Cone20ag0601 Lsi04g02333 Csa03g04553 Chy04g00148 . . . . . . Bpe04g00396 . . Sed01g3987 Cmo01g01483 Cmo09g00617 Cma09g00636 . . . . Cpe02g00513 Bhi09g02582 Tan01g3937 Cmetu09g1599 . Hepe01g2223 Mch11g0774 . . . . . . . . . . . Cme04g00174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010529 2 4 2 2 2 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g02333 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0